Variant report

Variant	rs208016
Chromosome Location	chr17:46249871-46249872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46228679..46233044-chr17:46249536..46252436,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2044985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2428607	1.00[ASN][1000 genomes]
rs2525108	1.00[ASN][1000 genomes]
rs2525111	1.00[ASN][1000 genomes]
rs2597170	1.00[ASN][1000 genomes]
rs35738964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274478	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6504092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7405753	1.00[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap]
rs8078698	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:46240000-46250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46241000-46250200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:46245000-46252200	Weak transcription	GM12878-XiMat	blood
9	chr17:46245400-46250800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:46245800-46250600	Strong transcription	Primary T cells from cord blood	blood
11	chr17:46246200-46250200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr17:46246600-46250200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:46247000-46250400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:46247000-46258600	Weak transcription	Primary B cells from cord blood	blood
15	chr17:46247400-46253000	Weak transcription	Thymus	Thymus
16	chr17:46247800-46250800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr17:46247800-46254400	Weak transcription	Fetal Thymus	thymus
18	chr17:46248000-46253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:46248200-46253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr17:46248400-46250400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:46248400-46250600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:46249000-46251200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:46249200-46250800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr17:46249800-46250000	Bivalent Enhancer	Fetal Brain Male	brain

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