Variant report

Variant	rs2084600
Chromosome Location	chr11:10352295-10352296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10770100	0.82[ASN][1000 genomes]
rs11042682	0.82[ASN][1000 genomes]
rs11042685	0.82[ASN][1000 genomes]
rs11607447	0.82[ASN][1000 genomes]
rs12281432	0.82[ASN][1000 genomes]
rs1372809	0.82[ASN][1000 genomes]
rs1450271	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562782	0.88[AFR][1000 genomes]
rs1580004	0.80[EUR][1000 genomes]
rs1580005	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1580006	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2015148	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083714	0.82[ASN][1000 genomes]
rs2197170	0.82[ASN][1000 genomes]
rs2923089	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923095	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2923098	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2957683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957684	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957685	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957688	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957689	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2957691	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2957693	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4258371	0.82[ASN][1000 genomes]
rs4430500	0.82[ASN][1000 genomes]
rs4553358	0.82[ASN][1000 genomes]
rs4612801	0.82[ASN][1000 genomes]
rs4909923	0.82[ASN][1000 genomes]
rs4910104	0.82[ASN][1000 genomes]
rs4910109	0.82[ASN][1000 genomes]
rs61147745	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7117478	0.82[ASN][1000 genomes]
rs716804	0.82[ASN][1000 genomes]
rs7926490	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927363	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7937758	0.82[ASN][1000 genomes]
rs7941312	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941414	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9704692	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10343400-10353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:10344000-10353200	Enhancers	NH-A	brain
3	chr11:10344000-10353400	Enhancers	Osteobl	bone
4	chr11:10344600-10353200	Enhancers	Hela-S3	cervix
5	chr11:10344600-10353800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:10345600-10354000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:10347200-10353600	Enhancers	NHDF-Ad	bronchial
8	chr11:10348200-10353200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10348200-10353400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:10348400-10353200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:10349800-10352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:10350000-10352400	Enhancers	NHEK	skin
14	chr11:10350600-10352400	Weak transcription	Small Intestine	intestine
15	chr11:10350600-10352400	Enhancers	HUVEC	blood vessel
16	chr11:10350600-10352800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:10350600-10353000	Enhancers	NHLF	lung
18	chr11:10350600-10354400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:10351000-10353000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10351600-10354800	Weak transcription	Adipose Nuclei	Adipose
21	chr11:10352200-10354400	Weak transcription	HepG2	liver

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