Variant report

Variant	rs1580006
Chromosome Location	chr11:10370675-10370676
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12281432	0.92[CEU][hapmap]
rs1372809	0.92[CEU][hapmap]
rs1450271	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1580004	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1580005	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2015148	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2084600	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2197170	0.92[CEU][hapmap]
rs2923089	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2923095	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2923098	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2923099	0.94[AFR][1000 genomes]
rs2957683	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957684	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2957685	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2957688	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2957689	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957691	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957692	0.94[AFR][1000 genomes]
rs2957693	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957694	0.93[AFR][1000 genomes]
rs4612801	0.89[CEU][hapmap]
rs61147745	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs716804	0.93[CEU][hapmap]
rs7926490	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7927363	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937758	0.93[CEU][hapmap]
rs7941312	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7941414	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9704692	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10367400-10372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10368800-10373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:10369600-10374200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10369800-10371400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:10369800-10373000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10369800-10373000	Enhancers	Adipose Nuclei	Adipose
7	chr11:10369800-10374000	Enhancers	HSMM	muscle
8	chr11:10369800-10374000	Enhancers	NHDF-Ad	bronchial
9	chr11:10369800-10374200	Enhancers	NHLF	lung
10	chr11:10369800-10378000	Enhancers	Placenta	Placenta
11	chr11:10370000-10372800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:10370000-10373000	Enhancers	HepG2	liver
13	chr11:10370000-10374200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:10370000-10374200	Enhancers	Osteobl	bone
15	chr11:10370200-10370800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:10370200-10370800	Enhancers	Fetal Heart	heart
17	chr11:10370200-10370800	Enhancers	Pancreas	Pancrea
18	chr11:10370200-10371600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:10370200-10372200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:10370200-10373200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:10370200-10373200	Enhancers	HSMMtube	muscle
22	chr11:10370200-10374200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:10370400-10371600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr11:10370400-10372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:10370600-10370800	Enhancers	Lung	lung
26	chr11:10370600-10370800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:10370600-10372000	Weak transcription	Fetal Intestine Large	intestine
28	chr11:10370600-10372600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:10370600-10373000	Enhancers	Hela-S3	cervix
30	chr11:10370600-10373000	Enhancers	NH-A	brain
31	chr11:10370600-10373600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:10370600-10374200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:10370600-10374200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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