Variant report
| Variant | rs2957692 |
|---|---|
| Chromosome Location | chr11:10368119-10368120 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10770106 | 0.81[CEU][hapmap] |
| rs13306112 | 0.85[CHD][hapmap] |
| rs1372811 | 0.84[CEU][hapmap] |
| rs1450271 | 0.86[AFR][1000 genomes] |
| rs1562782 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1580005 | 0.94[AFR][1000 genomes] |
| rs1580006 | 0.94[AFR][1000 genomes] |
| rs1597450 | 0.81[ASN][1000 genomes] |
| rs1822292 | 0.85[CHD][hapmap] |
| rs1822293 | 0.84[CEU][hapmap];0.85[CHD][hapmap] |
| rs2015148 | 0.88[AFR][1000 genomes] |
| rs2044781 | 0.81[ASN][1000 genomes] |
| rs2923089 | 0.86[AFR][1000 genomes] |
| rs2923096 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2923097 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2923098 | 0.97[AFR][1000 genomes] |
| rs2923099 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2957684 | 0.82[AFR][1000 genomes] |
| rs2957685 | 0.82[AFR][1000 genomes] |
| rs2957688 | 0.93[AFR][1000 genomes] |
| rs2957689 | 0.95[AFR][1000 genomes] |
| rs2957691 | 0.95[AFR][1000 genomes] |
| rs2957693 | 0.94[AFR][1000 genomes] |
| rs2957694 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61147745 | 0.91[AFR][1000 genomes] |
| rs7124401 | 0.85[CHD][hapmap] |
| rs7925720 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7926490 | 0.85[AFR][1000 genomes] |
| rs7927363 | 0.93[AFR][1000 genomes] |
| rs7935934 | 0.85[CHD][hapmap] |
| rs7938491 | 0.83[CHD][hapmap] |
| rs7941312 | 0.84[AFR][1000 genomes] |
| rs7941320 | 0.81[ASN][1000 genomes] |
| rs7941414 | 0.94[AFR][1000 genomes] |
| rs9704692 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Circulating vasoactive peptide levels | 23381795 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:10348200-10370200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr11:10367400-10372000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr11:10367800-10368200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
