Variant report

Variant	rs2044781
Chromosome Location	chr11:10368823-10368824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12279871	0.81[CEU][hapmap]
rs13306112	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1375996	0.92[ASN][1000 genomes]
rs1450265	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1450266	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs1450268	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs1450275	0.81[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs1450276	0.83[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs1470686	0.95[EUR][1000 genomes]
rs1562782	0.85[CHD][hapmap]
rs1597450	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907654	0.91[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs17294609	0.91[CEU][hapmap]
rs17294693	0.91[CEU][hapmap];0.87[TSI][hapmap]
rs17295786	0.91[CEU][hapmap]
rs17296211	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs17296765	0.87[EUR][1000 genomes]
rs17358882	0.91[CEU][hapmap]
rs17359382	0.91[CEU][hapmap]
rs17360118	0.91[CEU][hapmap]
rs2044142	0.83[CHD][hapmap]
rs28733206	0.90[EUR][1000 genomes]
rs2923099	0.81[ASN][1000 genomes]
rs2957657	0.91[CEU][hapmap];0.83[CHD][hapmap];0.88[TSI][hapmap]
rs2957686	0.93[EUR][1000 genomes]
rs2957692	0.81[ASN][1000 genomes]
rs2957694	0.81[ASN][1000 genomes]
rs4077089	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4403799	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs61889842	0.81[EUR][1000 genomes]
rs61889843	0.82[EUR][1000 genomes]
rs61889845	0.81[EUR][1000 genomes]
rs61889846	0.81[EUR][1000 genomes]
rs61889847	0.81[EUR][1000 genomes]
rs61891762	0.90[EUR][1000 genomes]
rs61891764	0.91[EUR][1000 genomes]
rs61891767	0.91[EUR][1000 genomes]
rs61891768	0.92[EUR][1000 genomes]
rs61891770	0.90[EUR][1000 genomes]
rs61891771	0.92[EUR][1000 genomes]
rs61891773	0.92[EUR][1000 genomes]
rs61891775	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61891776	0.90[EUR][1000 genomes]
rs61891793	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7108385	0.91[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs7109096	0.92[EUR][1000 genomes]
rs7123541	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7129220	0.91[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs72851648	0.81[EUR][1000 genomes]
rs72851670	0.91[EUR][1000 genomes]
rs72851674	0.88[EUR][1000 genomes]
rs7929332	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs7930218	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs7935257	0.81[EUR][1000 genomes]
rs7941320	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941557	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7949974	0.81[EUR][1000 genomes]
rs896043	0.91[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs9705133	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10348200-10370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:10367400-10372000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10368200-10370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:10368400-10369800	Weak transcription	HSMM	muscle
5	chr11:10368800-10373000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links