Variant report

Variant	rs16907654
Chromosome Location	chr11:10345436-10345437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9778947..9781538-chr11:10344388..10346239,2	K562	blood:
2	chr11:10328246..10329978-chr11:10344544..10346317,2	MCF-7	breast:
3	chr11:10323501..10326681-chr11:10342125..10345667,3	MCF-7	breast:
4	chr11:10322256..10324050-chr11:10344001..10345777,2	K562	blood:
5	chr11:10322503..10324808-chr11:10343209..10345982,2	MCF-7	breast:
6	chr11:9779620..9781538-chr11:10344739..10347064,2	K562	blood:

Variant related genes	Relation type
ENSG00000246273	Chromatin interaction
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs12279871	0.90[CEU][hapmap]
rs1372810	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450266	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	1.00[ASW][hapmap];0.90[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	1.00[ASW][hapmap];0.91[CEU][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470686	0.97[EUR][1000 genomes]
rs1597450	0.89[EUR][1000 genomes]
rs17292774	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17296211	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2044781	0.92[EUR][1000 genomes]
rs28733206	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2957657	1.00[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2957686	0.97[EUR][1000 genomes]
rs4077089	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.89[EUR][1000 genomes]
rs61877264	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878652	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61878654	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.91[AMR][1000 genomes]
rs61889957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891764	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61891776	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891793	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7103637	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108385	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123467	0.82[AMR][1000 genomes]
rs7123541	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7929332	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7941320	0.92[EUR][1000 genomes]
rs7941557	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7945990	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10338400-10346800	Enhancers	NHDF-Ad	bronchial
2	chr11:10339600-10348800	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:10340200-10347400	Weak transcription	Pancreas	Pancrea
4	chr11:10340400-10350000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:10340800-10346200	Weak transcription	Small Intestine	intestine
6	chr11:10340800-10348400	Enhancers	Fetal Stomach	stomach
7	chr11:10341200-10348600	Enhancers	Rectal Smooth Muscle	rectum
8	chr11:10341400-10346400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10342600-10346000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:10342800-10351600	Enhancers	Adipose Nuclei	Adipose
11	chr11:10343000-10345800	Enhancers	Fetal Muscle Leg	muscle
12	chr11:10343200-10351000	Enhancers	Stomach Mucosa	stomach
13	chr11:10343400-10345600	Enhancers	Placenta	Placenta
14	chr11:10343400-10346800	Enhancers	Fetal Intestine Large	intestine
15	chr11:10343400-10347800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:10343400-10353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:10343800-10345600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:10343800-10350200	Enhancers	NHLF	lung
19	chr11:10344000-10345600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:10344000-10345600	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:10344000-10345800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:10344000-10346000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:10344000-10346000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr11:10344000-10346000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr11:10344000-10346000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:10344000-10346000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:10344000-10347200	Enhancers	Fetal Intestine Small	intestine
28	chr11:10344000-10347600	Enhancers	Fetal Lung	lung
29	chr11:10344000-10349600	Enhancers	HUVEC	blood vessel
30	chr11:10344000-10351600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:10344000-10353200	Enhancers	NH-A	brain
32	chr11:10344000-10353400	Enhancers	Osteobl	bone
33	chr11:10344200-10345600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:10344200-10345800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr11:10344200-10346000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:10344200-10346000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:10344400-10345800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr11:10344400-10346000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:10344400-10346000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr11:10344400-10348400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:10344400-10349000	Enhancers	Aorta	Aorta
42	chr11:10344400-10351600	Enhancers	Ovary	ovary
43	chr11:10344600-10345800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:10344600-10346800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:10344600-10347000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:10344600-10347200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:10344600-10347200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:10344600-10347400	Enhancers	Liver	Liver
49	chr11:10344600-10347400	Weak transcription	Right Ventricle	heart
50	chr11:10344600-10347400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links