Variant report

Variant	rs61878652
Chromosome Location	chr11:10157452-10157453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1372810	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1450266	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1450268	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16907654	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17272133	0.80[AMR][1000 genomes]
rs17292774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17294609	0.85[EUR][1000 genomes]
rs17294693	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17295786	0.85[EUR][1000 genomes]
rs17296211	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17296765	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17358721	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17358882	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17359382	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17360118	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2920149	0.83[EUR][1000 genomes]
rs2957657	0.84[EUR][1000 genomes]
rs61876972	0.80[AMR][1000 genomes]
rs61876973	0.80[AMR][1000 genomes]
rs61876974	0.80[AMR][1000 genomes]
rs61876975	0.80[AMR][1000 genomes]
rs61876976	0.80[AMR][1000 genomes]
rs61876978	0.80[AMR][1000 genomes]
rs61876980	0.80[AMR][1000 genomes]
rs61876982	0.80[AMR][1000 genomes]
rs61876983	0.80[AMR][1000 genomes]
rs61876984	0.80[AMR][1000 genomes]
rs61877005	0.80[AMR][1000 genomes]
rs61877039	0.80[AMR][1000 genomes]
rs61877042	0.87[AMR][1000 genomes]
rs61877044	0.91[AMR][1000 genomes]
rs61877054	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877263	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61878627	0.85[EUR][1000 genomes]
rs61878635	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878654	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61878655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61878657	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61878658	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61878659	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61880160	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61889783	0.85[EUR][1000 genomes]
rs61889785	0.85[EUR][1000 genomes]
rs61889795	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889796	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889802	0.84[EUR][1000 genomes]
rs61889815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889816	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889817	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61889836	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61889840	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889842	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61889843	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61889845	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61889846	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61889847	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61889956	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61889957	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891770	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61891771	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61891773	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61892569	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892570	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61892572	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61892573	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61892575	0.88[EUR][1000 genomes]
rs61892593	0.84[EUR][1000 genomes]
rs61892594	0.84[EUR][1000 genomes]
rs61892595	0.85[EUR][1000 genomes]
rs61892596	0.85[EUR][1000 genomes]
rs61892597	0.85[EUR][1000 genomes]
rs6483859	0.80[AMR][1000 genomes]
rs6484142	0.84[EUR][1000 genomes]
rs7103637	0.85[EUR][1000 genomes]
rs7104591	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7105355	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7107373	0.85[EUR][1000 genomes]
rs7108187	0.80[AMR][1000 genomes]
rs7108546	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7109096	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7110027	0.80[AMR][1000 genomes]
rs7111544	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7111647	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7117364	0.80[AMR][1000 genomes]
rs7118211	0.80[AMR][1000 genomes]
rs7118427	0.80[AMR][1000 genomes]
rs7120043	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122370	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7123467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123541	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7125823	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7129220	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7131546	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72850458	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72851648	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72855652	0.80[AMR][1000 genomes]
rs72855680	0.80[AMR][1000 genomes]
rs72857108	0.80[AMR][1000 genomes]
rs72858820	0.91[AMR][1000 genomes]
rs72858863	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72858902	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72861738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72861762	0.88[EUR][1000 genomes]
rs72861767	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72861799	0.82[EUR][1000 genomes]
rs7342224	0.80[AMR][1000 genomes]
rs7929332	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7930218	0.85[EUR][1000 genomes]
rs7933724	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7935257	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7938570	0.80[AMR][1000 genomes]
rs7938773	0.80[AMR][1000 genomes]
rs7939096	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7945990	0.85[EUR][1000 genomes]
rs7947210	0.85[EUR][1000 genomes]
rs7949974	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7952455	0.80[AMR][1000 genomes]
rs896043	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:10144800-10161400	Weak transcription	HSMM	muscle
5	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
6	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10147800-10160800	Weak transcription	NHEK	skin
9	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10148400-10161400	Weak transcription	NHLF	lung
13	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:10152800-10161400	Weak transcription	Ovary	ovary
17	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
19	chr11:10157000-10157600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:10157000-10158200	Weak transcription	Fetal Stomach	stomach
21	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:10157200-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links