Variant report

Variant	rs7107373
Chromosome Location	chr11:10255215-10255216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10253231..10255912-chr11:10256898..10258938,2	K562	blood:
2	chr11:10254716..10258095-chr11:10261173..10265097,3	K562	blood:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1372810	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[ASN][1000 genomes]
rs1450266	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	1.00[ASN][1000 genomes]
rs16907654	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17296211	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs2920149	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2957657	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4077089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.82[EUR][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.86[EUR][1000 genomes]
rs61877264	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878635	0.85[EUR][1000 genomes]
rs61878652	0.85[EUR][1000 genomes]
rs61878654	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61889957	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891773	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.82[EUR][1000 genomes]
rs61891776	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7103637	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108385	1.00[ASN][1000 genomes]
rs7108546	0.88[AFR][1000 genomes]
rs7109096	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7123541	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131546	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	1.00[ASN][1000 genomes]
rs72858863	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929332	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7941557	0.81[EUR][1000 genomes]
rs7945990	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:10240600-10259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:10247800-10259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:10252200-10264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:10253000-10268200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:10253800-10256600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr11:10253800-10256800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:10254000-10255600	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:10254000-10258800	Weak transcription	Left Ventricle	heart
10	chr11:10254000-10259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:10254000-10263400	Weak transcription	Ovary	ovary
12	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:10254200-10256000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10254400-10256200	Enhancers	NHDF-Ad	bronchial
15	chr11:10254400-10256400	Enhancers	NHLF	lung
16	chr11:10254400-10256800	Enhancers	Hela-S3	cervix
17	chr11:10254400-10257400	Weak transcription	Fetal Stomach	stomach
18	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:10254600-10256200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10254600-10265800	Weak transcription	Fetal Lung	lung
21	chr11:10254600-10268800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:10254800-10255400	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:10254800-10255600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:10254800-10255600	Enhancers	HUVEC	blood vessel
25	chr11:10254800-10255800	Enhancers	HMEC	breast
26	chr11:10254800-10256800	Enhancers	NHEK	skin
27	chr11:10255000-10255400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:10255000-10255400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:10255200-10255400	Enhancers	Adipose Nuclei	Adipose
30	chr11:10255200-10255600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:10255200-10255600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:10255200-10255600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10255200-10255600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:10255200-10255600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:10255200-10255600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:10255200-10255600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:10255200-10255800	Enhancers	HSMM	muscle
38	chr11:10255200-10255800	Enhancers	Osteobl	bone
39	chr11:10255200-10256000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:10255200-10256600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links