Variant report

Variant	rs7108546
Chromosome Location	chr11:10155018-10155019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1372810	0.91[AFR][1000 genomes]
rs17292774	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17294609	0.91[AFR][1000 genomes]
rs17358721	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17358882	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17359382	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17360118	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61877042	0.83[AMR][1000 genomes]
rs61877044	0.87[AMR][1000 genomes]
rs61877054	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61877263	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61877264	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61878627	0.84[EUR][1000 genomes]
rs61878635	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61878637	0.82[EUR][1000 genomes]
rs61878652	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878654	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878655	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878657	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878658	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61878659	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61880160	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61889783	0.91[AFR][1000 genomes]
rs61889785	0.91[AFR][1000 genomes]
rs61889795	0.91[AFR][1000 genomes]
rs61889796	0.91[AFR][1000 genomes]
rs61889815	0.88[AFR][1000 genomes]
rs61889816	0.88[AFR][1000 genomes]
rs61889817	0.88[AFR][1000 genomes]
rs61889956	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61889957	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61892569	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61892570	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61892572	0.84[EUR][1000 genomes]
rs61892573	0.84[EUR][1000 genomes]
rs61892575	0.82[EUR][1000 genomes]
rs61892593	0.91[AFR][1000 genomes]
rs61892594	0.91[AFR][1000 genomes]
rs61892595	0.91[AFR][1000 genomes]
rs61892596	0.91[AFR][1000 genomes]
rs61892597	0.91[AFR][1000 genomes]
rs7103637	0.88[AFR][1000 genomes]
rs7104591	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7105355	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7107373	0.88[AFR][1000 genomes]
rs7111544	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7111647	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7120043	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7122370	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123467	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7125823	0.91[AFR][1000 genomes]
rs7131546	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72850458	0.88[AFR][1000 genomes]
rs72858820	0.87[AMR][1000 genomes]
rs72858863	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72858902	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72861738	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72861762	0.81[EUR][1000 genomes]
rs72861767	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7929332	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7933724	0.91[AFR][1000 genomes]
rs7939096	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945990	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10140000-10156200	Weak transcription	Fetal Lung	lung
5	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10144600-10156400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10144800-10155200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:10144800-10161400	Weak transcription	HSMM	muscle
10	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
11	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:10145800-10156400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10147800-10160800	Weak transcription	NHEK	skin
15	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:10148400-10161400	Weak transcription	NHLF	lung
19	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:10151800-10156400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:10152600-10155600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:10152600-10156200	Weak transcription	Right Ventricle	heart
25	chr11:10152800-10156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:10152800-10161400	Weak transcription	Ovary	ovary
27	chr11:10153000-10156200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:10153800-10156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:10154800-10155600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:10154800-10156000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:10155000-10157000	Strong transcription	Fetal Stomach	stomach

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