Variant report

Variant	rs17292774
Chromosome Location	chr11:10161442-10161443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs12098983	1.00[ASN][1000 genomes]
rs12274440	1.00[ASN][1000 genomes]
rs12279871	1.00[CEU][hapmap]
rs1372810	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1450266	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs1450276	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs16907654	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17271623	1.00[ASN][1000 genomes]
rs17272133	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17296211	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs2920149	0.83[EUR][1000 genomes]
rs2957657	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4077089	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs61876949	1.00[ASN][1000 genomes]
rs61876951	1.00[ASN][1000 genomes]
rs61876972	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876973	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876974	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876975	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876976	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876977	1.00[ASN][1000 genomes]
rs61876978	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876980	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876982	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876983	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876984	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877004	1.00[ASN][1000 genomes]
rs61877005	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877039	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877042	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878627	0.85[EUR][1000 genomes]
rs61878635	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61878652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61878654	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61889957	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	1.00[ASN][1000 genomes]
rs61891767	1.00[ASN][1000 genomes]
rs61891768	1.00[ASN][1000 genomes]
rs61891770	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61891773	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891776	1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483859	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.84[EUR][1000 genomes]
rs66536570	1.00[ASN][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7108385	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7108546	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7109096	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7110027	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7118427	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7119001	1.00[CEU][hapmap]
rs7120043	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120403	1.00[ASN][1000 genomes]
rs7122370	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7123541	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7123546	1.00[ASN][1000 genomes]
rs7125823	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131546	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	1.00[ASN][1000 genomes]
rs72851674	1.00[ASN][1000 genomes]
rs72855652	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72855680	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72857108	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858820	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342224	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7929332	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935235	1.00[ASN][1000 genomes]
rs7935257	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938570	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938773	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7945990	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949110	1.00[ASN][1000 genomes]
rs7949493	1.00[ASN][1000 genomes]
rs7949974	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952455	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520415	chr11:10159237-10164456	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
3	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
5	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10160400-10162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:10160800-10161800	Enhancers	Adipose Nuclei	Adipose
10	chr11:10160800-10162000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:10160800-10162000	Enhancers	Osteobl	bone
12	chr11:10160800-10162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10160800-10162400	Enhancers	Hela-S3	cervix
16	chr11:10160800-10162400	Enhancers	HMEC	breast
17	chr11:10160800-10162400	Enhancers	HUVEC	blood vessel
18	chr11:10160800-10162400	Enhancers	NHEK	skin
19	chr11:10160800-10163000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10160800-10164600	Enhancers	NHDF-Ad	bronchial
21	chr11:10161000-10161800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10161000-10161800	Enhancers	NH-A	brain
23	chr11:10161000-10162000	Enhancers	HSMMtube	muscle
24	chr11:10161000-10162200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:10161000-10162200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:10161200-10161800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:10161200-10162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:10161200-10162000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:10161200-10162000	Enhancers	Colon Smooth Muscle	Colon
30	chr11:10161200-10162000	Enhancers	Rectal Smooth Muscle	rectum
31	chr11:10161200-10162400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:10161200-10162400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10161400-10161800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:10161400-10162000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:10161400-10162000	Enhancers	Ovary	ovary
36	chr11:10161400-10162000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr11:10161400-10162000	Enhancers	Psoas Muscle	Psoas
38	chr11:10161400-10162000	Enhancers	Right Atrium	heart
39	chr11:10161400-10162000	Enhancers	A549	lung
40	chr11:10161400-10162400	Enhancers	Right Ventricle	heart
41	chr11:10161400-10162400	Enhancers	HSMM	muscle
42	chr11:10161400-10162400	Enhancers	NHLF	lung
43	chr11:10161400-10163000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links