The 2.0 version of rSNPBase

Variant report

Variant rs12279871
Chromosome Location chr11:10228196-10228197
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:10208000-10229000 Weak transcription Aorta Aorta
2 chr11:10208800-10229400 Weak transcription NHLF lung
3 chr11:10219000-10242200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr11:10223800-10229600 Weak transcription Osteobl bone
5 chr11:10225600-10228400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr11:10226800-10230000 Enhancers iPS-15b Cell Line embryonic stem cell
7 chr11:10227000-10230200 Enhancers HUES6 Cell Line embryonic stem cell
8 chr11:10227000-10230200 Enhancers HUES64 Cell Line embryonic stem cell
9 chr11:10227000-10230400 Enhancers iPS-18 Cell Line embryonic stem cell
10 chr11:10227200-10228200 Enhancers Pancreatic Islets Pancreatic Islet
11 chr11:10227200-10229000 Weak transcription Ovary ovary
12 chr11:10227200-10229200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
13 chr11:10227200-10230200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr11:10227400-10228400 Enhancers ES-WA7 Cell Line embryonic stem cell
15 chr11:10227400-10235600 Weak transcription Psoas Muscle Psoas
16 chr11:10227400-10240000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr11:10227600-10228400 Enhancers ES-I3 Cell Line embryonic stem cell
18 chr11:10227600-10228400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr11:10227600-10228600 Flanking Active TSS HUES48 Cell Line embryonic stem cell
20 chr11:10227600-10232200 Weak transcription Right Atrium heart
21 chr11:10227600-10240200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr11:10227800-10228800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr11:10227800-10228800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr11:10227800-10229400 Weak transcription HepG2 liver
25 chr11:10227800-10229600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr11:10227800-10229600 Weak transcription Liver Liver
27 chr11:10227800-10230000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr11:10227800-10230200 Enhancers iPS-20b Cell Line embryonic stem cell
29 chr11:10227800-10239800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr11:10227800-10240000 Weak transcription H1 Cell Line embryonic stem cell
31 chr11:10227800-10242600 Weak transcription Esophagus oesophagus
32 chr11:10228000-10228400 Weak transcription NHDF-Ad bronchial
33 chr11:10228000-10229800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015