Variant report

Variant	rs1442734
Chromosome Location	chr11:10218003-10218004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:10217973-10218030	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10208315..10210271-chr11:10216958..10218674,2	K562	blood:

Variant related genes	Relation type
SBF2	TF binding region

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10160247	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10160669	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10160692	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10500718	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10500719	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10500720	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10500721	0.88[ASN][1000 genomes]
rs10500722	0.83[ASN][1000 genomes]
rs10500723	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500724	0.82[ASN][1000 genomes]
rs10743131	0.81[ASN][1000 genomes]
rs10743132	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10770105	0.81[ASN][1000 genomes]
rs10770106	0.82[ASN][1000 genomes]
rs10840379	0.94[ASN][1000 genomes]
rs10840381	0.81[ASN][1000 genomes]
rs10840382	0.81[ASN][1000 genomes]
rs10840384	0.93[ASN][1000 genomes]
rs10840386	0.88[ASN][1000 genomes]
rs11042586	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042650	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042652	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042653	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042656	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042657	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042659	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042661	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042662	0.88[ASN][1000 genomes]
rs11042663	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042664	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042666	0.97[ASN][1000 genomes]
rs11042686	0.93[ASN][1000 genomes]
rs11042689	0.94[ASN][1000 genomes]
rs11042702	0.81[ASN][1000 genomes]
rs11042703	0.81[ASN][1000 genomes]
rs11042714	0.81[ASN][1000 genomes]
rs11042716	0.82[ASN][1000 genomes]
rs11042717	0.87[ASN][1000 genomes]
rs11042721	0.81[ASN][1000 genomes]
rs11042725	0.85[ASN][1000 genomes]
rs1135372	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1135374	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607174	0.81[ASN][1000 genomes]
rs11607621	0.94[ASN][1000 genomes]
rs11821308	0.84[ASN][1000 genomes]
rs12273935	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12274104	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12275224	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12277662	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12278680	0.97[ASN][1000 genomes]
rs12278735	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280005	0.97[ASN][1000 genomes]
rs12281409	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12281526	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282974	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12284884	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12286545	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286927	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12287386	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288200	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288275	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288486	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288654	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291196	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291198	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291253	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12293757	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12294455	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418690	0.94[ASN][1000 genomes]
rs12419064	0.82[ASN][1000 genomes]
rs12419593	0.81[ASN][1000 genomes]
rs12421666	0.85[ASN][1000 genomes]
rs13377226	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13377297	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13377305	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13377397	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13377398	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1442733	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1442735	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1442736	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907462	0.87[ASN][1000 genomes]
rs16907471	0.88[ASN][1000 genomes]
rs16907481	0.89[ASN][1000 genomes]
rs16907483	0.89[ASN][1000 genomes]
rs16907493	0.89[ASN][1000 genomes]
rs16907496	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907498	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16907500	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907503	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907504	0.89[ASN][1000 genomes]
rs16907509	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16907515	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907519	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907527	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907528	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907533	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907544	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907552	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907554	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907561	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907564	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907568	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907575	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907615	0.94[ASN][1000 genomes]
rs16907635	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1812853	0.80[ASN][1000 genomes]
rs1822294	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1822295	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867136	0.97[ASN][1000 genomes]
rs1867137	0.97[ASN][1000 genomes]
rs1867138	0.97[ASN][1000 genomes]
rs2028575	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028576	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028577	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028578	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2044143	0.81[ASN][1000 genomes]
rs2044144	0.81[ASN][1000 genomes]
rs2069214	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099877	0.85[ASN][1000 genomes]
rs2119991	0.97[ASN][1000 genomes]
rs2278628	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278630	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278632	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278633	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278634	0.84[ASN][1000 genomes]
rs2403290	0.85[ASN][1000 genomes]
rs2920147	0.86[ASN][1000 genomes]
rs2957671	0.94[ASN][1000 genomes]
rs2957674	0.94[ASN][1000 genomes]
rs2957699	0.94[ASN][1000 genomes]
rs3178898	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34051776	0.81[ASN][1000 genomes]
rs34124136	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34692066	0.81[ASN][1000 genomes]
rs35598338	0.94[ASN][1000 genomes]
rs35737881	0.81[ASN][1000 genomes]
rs35815123	0.85[ASN][1000 genomes]
rs36167833	0.80[ASN][1000 genomes]
rs36170347	0.81[ASN][1000 genomes]
rs3814700	0.88[ASN][1000 genomes]
rs4076050	0.82[ASN][1000 genomes]
rs4399321	0.88[ASN][1000 genomes]
rs4444073	0.80[ASN][1000 genomes]
rs4459296	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4531462	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4543988	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4597056	0.81[ASN][1000 genomes]
rs4622247	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4641466	0.88[ASN][1000 genomes]
rs4910115	0.81[ASN][1000 genomes]
rs55893317	0.85[ASN][1000 genomes]
rs56319831	0.84[ASN][1000 genomes]
rs56758314	0.86[ASN][1000 genomes]
rs57153895	0.88[ASN][1000 genomes]
rs57520536	0.89[ASN][1000 genomes]
rs57521137	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57522724	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57595438	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57618276	0.87[ASN][1000 genomes]
rs57761181	0.84[ASN][1000 genomes]
rs58054521	0.84[ASN][1000 genomes]
rs58340019	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58652557	0.82[ASN][1000 genomes]
rs58842960	0.81[EUR][1000 genomes]
rs59717668	0.92[ASN][1000 genomes]
rs59829967	0.82[ASN][1000 genomes]
rs59901009	0.84[ASN][1000 genomes]
rs60257382	0.82[ASN][1000 genomes]
rs60319025	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60578195	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61149838	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61520995	0.87[ASN][1000 genomes]
rs61877260	0.84[ASN][1000 genomes]
rs61878584	0.80[ASN][1000 genomes]
rs61878585	0.80[ASN][1000 genomes]
rs61878625	0.82[ASN][1000 genomes]
rs61878627	0.87[ASN][1000 genomes]
rs61878628	0.87[ASN][1000 genomes]
rs61878631	0.86[ASN][1000 genomes]
rs61878632	0.87[ASN][1000 genomes]
rs61878634	0.87[ASN][1000 genomes]
rs61878638	0.84[ASN][1000 genomes]
rs61889798	0.94[ASN][1000 genomes]
rs61889955	0.87[ASN][1000 genomes]
rs6483969	0.80[ASN][1000 genomes]
rs6484012	0.89[ASN][1000 genomes]
rs6484147	0.81[ASN][1000 genomes]
rs6484148	0.81[ASN][1000 genomes]
rs6484152	0.81[ASN][1000 genomes]
rs6484161	0.81[ASN][1000 genomes]
rs7105321	0.81[ASN][1000 genomes]
rs7107290	0.81[ASN][1000 genomes]
rs7107399	0.81[ASN][1000 genomes]
rs7107727	0.91[ASN][1000 genomes]
rs7108358	0.81[ASN][1000 genomes]
rs7110652	0.81[ASN][1000 genomes]
rs7111724	0.80[ASN][1000 genomes]
rs7115142	0.85[ASN][1000 genomes]
rs7116147	0.81[ASN][1000 genomes]
rs7118500	0.81[ASN][1000 genomes]
rs7124925	0.89[ASN][1000 genomes]
rs7129047	0.88[ASN][1000 genomes]
rs7129531	0.84[ASN][1000 genomes]
rs721008	0.89[ASN][1000 genomes]
rs726102	0.81[ASN][1000 genomes]
rs72860548	0.86[ASN][1000 genomes]
rs73412899	0.91[ASN][1000 genomes]
rs73415015	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7479039	0.80[ASN][1000 genomes]
rs7927874	0.88[ASN][1000 genomes]
rs7933018	0.94[ASN][1000 genomes]
rs7935242	0.86[ASN][1000 genomes]
rs7938534	0.80[ASN][1000 genomes]
rs7938543	0.82[ASN][1000 genomes]
rs7946649	0.80[ASN][1000 genomes]
rs7947666	0.81[ASN][1000 genomes]
rs7952105	0.81[ASN][1000 genomes]
rs7952229	0.93[ASN][1000 genomes]
rs9735682	0.81[ASN][1000 genomes]
rs9888170	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10203600-10220000	Weak transcription	NH-A	brain
3	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10205800-10220600	Weak transcription	A549	lung
5	chr11:10207800-10218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
7	chr11:10208800-10218600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:10208800-10229400	Weak transcription	NHLF	lung
9	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
10	chr11:10209400-10219000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:10210000-10219000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
14	chr11:10213800-10218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:10214000-10218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:10214000-10219400	Weak transcription	Ovary	ovary
17	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10214200-10225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:10214400-10218600	Weak transcription	Osteobl	bone
20	chr11:10214600-10218600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10214800-10218600	Weak transcription	NHDF-Ad	bronchial
22	chr11:10214800-10224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10215600-10224400	Weak transcription	Monocytes-CD14+_RO01746	blood

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