Variant report

Variant	rs59829967
Chromosome Location	chr11:10158733-10158734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10160247	0.87[ASN][1000 genomes]
rs10160669	0.87[ASN][1000 genomes]
rs10160692	0.87[ASN][1000 genomes]
rs10500718	0.87[ASN][1000 genomes]
rs10500719	0.87[ASN][1000 genomes]
rs10500720	0.84[ASN][1000 genomes]
rs10500721	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10500722	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500724	0.84[ASN][1000 genomes]
rs10743131	0.83[ASN][1000 genomes]
rs10743133	0.81[ASN][1000 genomes]
rs10770105	0.82[ASN][1000 genomes]
rs10840381	0.83[ASN][1000 genomes]
rs10840382	0.83[ASN][1000 genomes]
rs11042650	0.87[ASN][1000 genomes]
rs11042652	0.85[ASN][1000 genomes]
rs11042653	0.85[ASN][1000 genomes]
rs11042656	0.83[ASN][1000 genomes]
rs11042657	0.83[ASN][1000 genomes]
rs11042659	0.83[ASN][1000 genomes]
rs11042661	0.83[ASN][1000 genomes]
rs11042662	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042663	0.83[ASN][1000 genomes]
rs11042664	0.83[ASN][1000 genomes]
rs11042666	0.84[ASN][1000 genomes]
rs11042687	0.82[ASN][1000 genomes]
rs11042702	0.83[ASN][1000 genomes]
rs11042703	0.83[ASN][1000 genomes]
rs11042714	0.83[ASN][1000 genomes]
rs11042716	0.84[ASN][1000 genomes]
rs1135372	0.87[ASN][1000 genomes]
rs1135374	0.89[ASN][1000 genomes]
rs11602090	0.82[ASN][1000 genomes]
rs11607174	0.83[ASN][1000 genomes]
rs11821308	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274104	0.85[ASN][1000 genomes]
rs12275224	0.83[ASN][1000 genomes]
rs12277662	0.80[ASN][1000 genomes]
rs12278680	0.82[ASN][1000 genomes]
rs12278735	0.85[ASN][1000 genomes]
rs12279861	0.82[ASN][1000 genomes]
rs12280005	0.84[ASN][1000 genomes]
rs12281409	0.82[ASN][1000 genomes]
rs12281526	0.83[ASN][1000 genomes]
rs12282974	0.82[ASN][1000 genomes]
rs12284884	0.83[ASN][1000 genomes]
rs12286545	0.82[ASN][1000 genomes]
rs12286927	0.85[ASN][1000 genomes]
rs12287386	0.85[ASN][1000 genomes]
rs12288200	0.83[ASN][1000 genomes]
rs12288275	0.83[ASN][1000 genomes]
rs12288486	0.85[ASN][1000 genomes]
rs12288654	0.83[ASN][1000 genomes]
rs12290748	0.81[ASN][1000 genomes]
rs12291196	0.85[ASN][1000 genomes]
rs12291198	0.85[ASN][1000 genomes]
rs12291253	0.83[ASN][1000 genomes]
rs12293757	0.87[ASN][1000 genomes]
rs12419593	0.83[ASN][1000 genomes]
rs12421666	0.92[ASN][1000 genomes]
rs13377226	0.81[ASN][1000 genomes]
rs13377397	0.87[ASN][1000 genomes]
rs13377398	0.82[ASN][1000 genomes]
rs1442733	0.83[ASN][1000 genomes]
rs1442734	0.82[ASN][1000 genomes]
rs1442736	0.83[ASN][1000 genomes]
rs16907462	0.83[ASN][1000 genomes]
rs16907471	0.83[ASN][1000 genomes]
rs16907481	0.85[ASN][1000 genomes]
rs16907483	0.83[ASN][1000 genomes]
rs16907493	0.84[ASN][1000 genomes]
rs16907496	0.89[ASN][1000 genomes]
rs16907498	0.89[ASN][1000 genomes]
rs16907500	0.89[ASN][1000 genomes]
rs16907503	0.89[ASN][1000 genomes]
rs16907504	0.89[ASN][1000 genomes]
rs16907509	0.88[ASN][1000 genomes]
rs16907515	0.87[ASN][1000 genomes]
rs16907519	0.87[ASN][1000 genomes]
rs16907527	0.87[ASN][1000 genomes]
rs16907528	0.87[ASN][1000 genomes]
rs16907533	0.87[ASN][1000 genomes]
rs16907544	0.85[ASN][1000 genomes]
rs16907552	0.85[ASN][1000 genomes]
rs16907554	0.85[ASN][1000 genomes]
rs16907561	0.83[ASN][1000 genomes]
rs16907564	0.83[ASN][1000 genomes]
rs16907568	0.83[ASN][1000 genomes]
rs16907575	0.82[ASN][1000 genomes]
rs16907635	0.82[ASN][1000 genomes]
rs1812853	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1822294	0.82[ASN][1000 genomes]
rs1822295	0.82[ASN][1000 genomes]
rs1867136	0.84[ASN][1000 genomes]
rs1867137	0.84[ASN][1000 genomes]
rs1867138	0.84[ASN][1000 genomes]
rs2028575	0.87[ASN][1000 genomes]
rs2028576	0.87[ASN][1000 genomes]
rs2028577	0.87[ASN][1000 genomes]
rs2028578	0.87[ASN][1000 genomes]
rs2044143	0.83[ASN][1000 genomes]
rs2044144	0.83[ASN][1000 genomes]
rs2069214	0.82[ASN][1000 genomes]
rs2083717	0.89[ASN][1000 genomes]
rs2099877	0.81[ASN][1000 genomes]
rs2119991	0.84[ASN][1000 genomes]
rs2278628	0.87[ASN][1000 genomes]
rs2278630	0.87[ASN][1000 genomes]
rs2278632	0.87[ASN][1000 genomes]
rs2278633	0.87[ASN][1000 genomes]
rs2278634	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2403261	0.81[AMR][1000 genomes]
rs2403290	0.81[ASN][1000 genomes]
rs2896514	0.83[AMR][1000 genomes]
rs2920147	0.87[ASN][1000 genomes]
rs3178898	0.89[ASN][1000 genomes]
rs34051776	0.83[ASN][1000 genomes]
rs34087225	0.80[ASN][1000 genomes]
rs34124136	0.87[ASN][1000 genomes]
rs34692066	0.83[ASN][1000 genomes]
rs35737881	0.83[ASN][1000 genomes]
rs35815123	0.82[ASN][1000 genomes]
rs36167833	0.82[ASN][1000 genomes]
rs36170347	0.83[ASN][1000 genomes]
rs4267063	0.89[ASN][1000 genomes]
rs4323860	0.89[ASN][1000 genomes]
rs4442543	0.82[ASN][1000 genomes]
rs4482025	0.86[ASN][1000 genomes]
rs4543988	0.87[ASN][1000 genomes]
rs4597056	0.83[ASN][1000 genomes]
rs4622247	0.87[ASN][1000 genomes]
rs4910115	0.83[ASN][1000 genomes]
rs55893317	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55933041	0.82[ASN][1000 genomes]
rs56319831	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56758314	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57180563	0.81[AMR][1000 genomes]
rs57520536	0.84[ASN][1000 genomes]
rs57521137	0.85[ASN][1000 genomes]
rs57595438	0.83[ASN][1000 genomes]
rs57618276	0.83[ASN][1000 genomes]
rs57761181	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58054521	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58340019	0.82[ASN][1000 genomes]
rs59901009	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60319025	0.83[ASN][1000 genomes]
rs60578195	0.87[ASN][1000 genomes]
rs61149838	0.87[ASN][1000 genomes]
rs61520995	0.83[ASN][1000 genomes]
rs61877018	0.82[AMR][1000 genomes]
rs61877043	0.81[AMR][1000 genomes]
rs61877260	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61878627	0.83[ASN][1000 genomes]
rs61878628	0.83[ASN][1000 genomes]
rs61878631	0.83[ASN][1000 genomes]
rs61878632	0.83[ASN][1000 genomes]
rs61878634	0.83[ASN][1000 genomes]
rs61878638	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61889955	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484012	0.87[ASN][1000 genomes]
rs6484147	0.83[ASN][1000 genomes]
rs6484148	0.83[ASN][1000 genomes]
rs6484152	0.83[ASN][1000 genomes]
rs67404901	0.83[AMR][1000 genomes]
rs7107290	0.83[ASN][1000 genomes]
rs7107399	0.83[ASN][1000 genomes]
rs7107916	0.83[AMR][1000 genomes]
rs7108358	0.83[ASN][1000 genomes]
rs7110652	0.83[ASN][1000 genomes]
rs7111724	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116147	0.83[ASN][1000 genomes]
rs7118500	0.83[ASN][1000 genomes]
rs7123728	0.89[ASN][1000 genomes]
rs7124925	0.85[ASN][1000 genomes]
rs7129047	0.84[ASN][1000 genomes]
rs7129531	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7130610	0.81[AMR][1000 genomes]
rs716803	0.81[ASN][1000 genomes]
rs721008	0.84[ASN][1000 genomes]
rs726102	0.83[ASN][1000 genomes]
rs72860548	0.83[ASN][1000 genomes]
rs73412899	0.89[ASN][1000 genomes]
rs73415015	0.89[ASN][1000 genomes]
rs7479039	0.85[ASN][1000 genomes]
rs7926141	0.83[AMR][1000 genomes]
rs7932484	0.83[AMR][1000 genomes]
rs7935297	0.82[AMR][1000 genomes]
rs7938543	0.84[ASN][1000 genomes]
rs7940348	0.83[AMR][1000 genomes]
rs7947666	0.83[ASN][1000 genomes]
rs7952105	0.83[ASN][1000 genomes]
rs9735682	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144200-10160800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:10144800-10161400	Weak transcription	HSMM	muscle
5	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
6	chr11:10145400-10160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:10145400-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:10147800-10160800	Weak transcription	NHEK	skin
9	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:10148200-10160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:10148400-10160800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10148400-10161400	Weak transcription	NHLF	lung
13	chr11:10148600-10160800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10148800-10160800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:10152800-10161400	Weak transcription	Ovary	ovary
17	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
19	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10157200-10160800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:10158200-10160800	Weak transcription	Psoas Muscle	Psoas
23	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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