Variant report

Variant	rs10500721
Chromosome Location	chr11:10203610-10203611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10203351..10204041-chr11:10328716..10329800,3	MCF-7	breast:
2	chr11:10201975..10204462-chr11:10314656..10317038,3	MCF-7	breast:
3	chr11:10203406..10203971-chr11:10344330..10345190,2	K562	blood:
4	chr11:10200393..10205018-chr11:10324375..10327775,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000133812	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 237 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs10160247	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10160669	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10160692	0.90[ASN][1000 genomes]
rs10500718	0.90[ASN][1000 genomes]
rs10500719	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10500720	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10500722	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500723	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10500724	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10743131	0.89[ASN][1000 genomes]
rs10743132	0.86[ASN][1000 genomes]
rs10743133	0.87[ASN][1000 genomes]
rs10770105	0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10770106	0.86[JPT][hapmap]
rs10840358	0.83[YRI][hapmap]
rs10840379	0.86[ASN][1000 genomes]
rs10840381	0.89[ASN][1000 genomes]
rs10840382	0.89[ASN][1000 genomes]
rs10840384	0.85[ASN][1000 genomes]
rs10840385	0.84[ASN][1000 genomes]
rs11042586	0.82[JPT][hapmap]
rs11042650	0.90[ASN][1000 genomes]
rs11042652	0.91[ASN][1000 genomes]
rs11042653	0.91[ASN][1000 genomes]
rs11042656	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11042657	0.93[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11042659	0.90[ASN][1000 genomes]
rs11042661	0.90[ASN][1000 genomes]
rs11042662	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042663	0.90[ASN][1000 genomes]
rs11042664	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11042666	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs11042686	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042687	0.88[ASN][1000 genomes]
rs11042689	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042702	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11042703	0.89[ASN][1000 genomes]
rs11042712	0.81[ASN][1000 genomes]
rs11042714	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11042716	0.90[ASN][1000 genomes]
rs11042717	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11042721	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1135372	0.84[ASN][1000 genomes]
rs1135374	0.86[ASN][1000 genomes]
rs11602090	0.85[ASN][1000 genomes]
rs11607174	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11607621	0.86[ASN][1000 genomes]
rs11821308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12274104	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12275224	0.90[ASN][1000 genomes]
rs12277662	0.87[ASN][1000 genomes]
rs12278680	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs12278735	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12279861	0.88[ASN][1000 genomes]
rs12280005	0.90[ASN][1000 genomes]
rs12281409	0.88[ASN][1000 genomes]
rs12281526	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12282974	0.88[ASN][1000 genomes]
rs12284884	0.90[ASN][1000 genomes]
rs12286545	0.88[ASN][1000 genomes]
rs12286927	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12287386	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12288200	0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12288275	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12288486	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12288654	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12290748	0.86[ASN][1000 genomes]
rs12291196	0.91[ASN][1000 genomes]
rs12291198	0.91[ASN][1000 genomes]
rs12291253	0.90[ASN][1000 genomes]
rs12293757	0.90[ASN][1000 genomes]
rs12418690	0.86[ASN][1000 genomes]
rs12419593	0.89[ASN][1000 genomes]
rs12421666	0.95[ASN][1000 genomes]
rs13377226	0.83[ASN][1000 genomes]
rs13377397	0.90[ASN][1000 genomes]
rs13377398	0.85[ASN][1000 genomes]
rs1442733	0.90[ASN][1000 genomes]
rs1442734	0.88[ASN][1000 genomes]
rs1442735	0.84[ASN][1000 genomes]
rs1442736	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs16907462	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16907471	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs16907481	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16907483	0.84[ASN][1000 genomes]
rs16907493	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16907496	0.86[ASN][1000 genomes]
rs16907498	0.86[ASN][1000 genomes]
rs16907500	0.86[ASN][1000 genomes]
rs16907503	0.86[ASN][1000 genomes]
rs16907504	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16907509	0.85[ASN][1000 genomes]
rs16907515	0.90[ASN][1000 genomes]
rs16907519	0.90[ASN][1000 genomes]
rs16907527	0.90[ASN][1000 genomes]
rs16907528	0.90[ASN][1000 genomes]
rs16907533	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs16907544	0.91[ASN][1000 genomes]
rs16907552	0.91[ASN][1000 genomes]
rs16907554	0.91[ASN][1000 genomes]
rs16907561	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs16907564	0.90[ASN][1000 genomes]
rs16907568	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs16907575	0.88[ASN][1000 genomes]
rs16907615	0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16907635	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1812853	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1822294	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1822295	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1867136	0.90[ASN][1000 genomes]
rs1867137	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs1867138	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs2028575	0.90[ASN][1000 genomes]
rs2028576	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2028577	0.90[ASN][1000 genomes]
rs2028578	0.90[ASN][1000 genomes]
rs2044143	0.89[ASN][1000 genomes]
rs2044144	0.89[ASN][1000 genomes]
rs2060658	0.86[JPT][hapmap]
rs2069214	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2083715	0.85[ASN][1000 genomes]
rs2083717	0.86[ASN][1000 genomes]
rs2099877	0.81[ASN][1000 genomes]
rs2119991	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs2278628	0.90[ASN][1000 genomes]
rs2278630	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2278632	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2278633	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2278634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2403290	0.81[ASN][1000 genomes]
rs2896513	0.82[JPT][hapmap]
rs2896514	0.82[JPT][hapmap]
rs2920147	0.93[ASN][1000 genomes]
rs2957671	0.86[ASN][1000 genomes]
rs2957674	0.86[ASN][1000 genomes]
rs2957699	0.86[ASN][1000 genomes]
rs3178898	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs34051776	0.89[ASN][1000 genomes]
rs34087225	0.86[ASN][1000 genomes]
rs34124136	0.87[ASN][1000 genomes]
rs34692066	0.89[ASN][1000 genomes]
rs34739790	0.84[ASN][1000 genomes]
rs35598338	0.86[ASN][1000 genomes]
rs35737881	0.89[ASN][1000 genomes]
rs35815123	0.82[ASN][1000 genomes]
rs36167833	0.88[ASN][1000 genomes]
rs36170347	0.89[ASN][1000 genomes]
rs3814700	0.91[JPT][hapmap]
rs4076050	0.85[JPT][hapmap]
rs4267063	0.86[ASN][1000 genomes]
rs4323860	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4399321	0.91[JPT][hapmap]
rs4418806	0.82[ASN][1000 genomes]
rs4442543	0.88[ASN][1000 genomes]
rs4444073	0.86[JPT][hapmap]
rs4482025	0.89[ASN][1000 genomes]
rs4543988	0.90[ASN][1000 genomes]
rs4597056	0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4622247	0.90[ASN][1000 genomes]
rs4641466	0.91[JPT][hapmap]
rs4910115	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs55893317	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55933041	0.88[ASN][1000 genomes]
rs56063978	0.85[ASN][1000 genomes]
rs56319831	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56758314	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56776911	0.82[ASN][1000 genomes]
rs57520536	0.84[ASN][1000 genomes]
rs57521137	0.91[ASN][1000 genomes]
rs57522724	0.85[ASN][1000 genomes]
rs57595438	0.90[ASN][1000 genomes]
rs57618276	0.84[ASN][1000 genomes]
rs57761181	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58054521	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58340019	0.88[ASN][1000 genomes]
rs59717668	0.82[ASN][1000 genomes]
rs59829967	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59901009	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60319025	0.90[ASN][1000 genomes]
rs60578195	0.90[ASN][1000 genomes]
rs61149838	0.90[ASN][1000 genomes]
rs61520995	0.84[ASN][1000 genomes]
rs61877260	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61878627	0.84[ASN][1000 genomes]
rs61878628	0.84[ASN][1000 genomes]
rs61878631	0.83[ASN][1000 genomes]
rs61878632	0.84[ASN][1000 genomes]
rs61878634	0.84[ASN][1000 genomes]
rs61878638	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61889798	0.86[ASN][1000 genomes]
rs61889955	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6483969	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6484012	0.84[ASN][1000 genomes]
rs6484147	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6484148	0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6484152	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7106234	0.83[CHB][hapmap]
rs7107021	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs7107040	0.81[ASN][1000 genomes]
rs7107290	0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7107399	0.89[ASN][1000 genomes]
rs7107727	0.81[ASN][1000 genomes]
rs7107916	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs7107951	0.85[ASN][1000 genomes]
rs7108358	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7110652	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7111724	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7116147	0.89[ASN][1000 genomes]
rs7118500	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7122422	0.88[CHB][hapmap]
rs7123728	0.89[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7124925	0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7129047	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7129531	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7130610	0.83[CHB][hapmap]
rs716803	0.87[ASN][1000 genomes]
rs721008	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs726102	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs72860548	0.83[ASN][1000 genomes]
rs73412899	0.86[ASN][1000 genomes]
rs73415015	0.86[ASN][1000 genomes]
rs7479039	0.89[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7924631	0.82[ASN][1000 genomes]
rs7925889	0.83[CHB][hapmap]
rs7933018	0.86[ASN][1000 genomes]
rs7936409	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7936461	0.83[CEU][hapmap]
rs7938543	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7946649	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7947666	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7952105	0.89[ASN][1000 genomes]
rs7952229	0.85[ASN][1000 genomes]
rs9645625	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs9735682	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10194800-10206800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:10201800-10204800	Weak transcription	NHDF-Ad	bronchial
7	chr11:10202400-10216000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:10203400-10208600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:10203600-10203800	Enhancers	Fetal Lung	lung
10	chr11:10203600-10215600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:10203600-10220000	Weak transcription	NH-A	brain

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