Variant report

Variant	rs16907615
Chromosome Location	chr11:10284299-10284300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:230)

rs_ID	r²[population]
rs10160247	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10160669	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10160692	0.93[ASN][1000 genomes]
rs10500718	0.93[ASN][1000 genomes]
rs10500719	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10500720	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10500721	0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10500722	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10500723	0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10500724	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10743131	0.86[ASN][1000 genomes]
rs10743132	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743133	0.84[ASN][1000 genomes]
rs10770105	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10770106	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10840379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840381	0.86[ASN][1000 genomes]
rs10840382	0.86[ASN][1000 genomes]
rs10840384	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840386	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042650	0.93[ASN][1000 genomes]
rs11042652	0.94[ASN][1000 genomes]
rs11042653	0.94[ASN][1000 genomes]
rs11042656	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11042657	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11042659	0.96[ASN][1000 genomes]
rs11042661	0.96[ASN][1000 genomes]
rs11042662	0.86[ASN][1000 genomes]
rs11042663	0.96[ASN][1000 genomes]
rs11042664	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11042666	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11042686	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042687	0.85[ASN][1000 genomes]
rs11042689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042702	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042703	0.86[ASN][1000 genomes]
rs11042714	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042716	0.87[ASN][1000 genomes]
rs11042717	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11042721	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042725	0.89[ASN][1000 genomes]
rs1115454	0.81[ASN][1000 genomes]
rs1135372	0.87[ASN][1000 genomes]
rs1135374	0.89[ASN][1000 genomes]
rs11607174	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11607621	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821308	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12273935	0.80[ASN][1000 genomes]
rs12274104	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12275224	0.96[ASN][1000 genomes]
rs12277662	0.93[ASN][1000 genomes]
rs12278680	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12278735	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12279861	0.85[ASN][1000 genomes]
rs12280005	0.95[ASN][1000 genomes]
rs12281409	0.98[ASN][1000 genomes]
rs12281526	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12282974	0.98[ASN][1000 genomes]
rs12284884	0.96[ASN][1000 genomes]
rs12286545	0.98[ASN][1000 genomes]
rs12286927	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12287386	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12288200	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12288275	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12288486	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12288654	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12290748	0.84[ASN][1000 genomes]
rs12291196	0.94[ASN][1000 genomes]
rs12291198	0.94[ASN][1000 genomes]
rs12291253	0.93[ASN][1000 genomes]
rs12293757	0.93[ASN][1000 genomes]
rs12294455	0.84[ASN][1000 genomes]
rs12418494	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12418690	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419064	0.86[ASN][1000 genomes]
rs12419593	0.86[ASN][1000 genomes]
rs12421666	0.83[ASN][1000 genomes]
rs13377226	0.85[ASN][1000 genomes]
rs13377297	0.81[ASN][1000 genomes]
rs13377305	0.80[ASN][1000 genomes]
rs13377397	0.93[ASN][1000 genomes]
rs13377398	0.89[ASN][1000 genomes]
rs1442733	0.96[ASN][1000 genomes]
rs1442734	0.94[ASN][1000 genomes]
rs1442735	0.90[ASN][1000 genomes]
rs1442736	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16907462	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16907471	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16907481	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16907483	0.86[ASN][1000 genomes]
rs16907493	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs16907496	0.89[ASN][1000 genomes]
rs16907498	0.89[ASN][1000 genomes]
rs16907500	0.89[ASN][1000 genomes]
rs16907503	0.89[ASN][1000 genomes]
rs16907504	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16907509	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16907515	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16907519	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16907527	0.93[ASN][1000 genomes]
rs16907528	0.93[ASN][1000 genomes]
rs16907533	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16907544	0.94[ASN][1000 genomes]
rs16907552	0.94[ASN][1000 genomes]
rs16907554	0.94[ASN][1000 genomes]
rs16907561	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16907564	0.96[ASN][1000 genomes]
rs16907568	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16907575	0.98[ASN][1000 genomes]
rs16907635	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1822294	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1822295	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1867136	0.95[ASN][1000 genomes]
rs1867137	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1867138	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2028575	0.93[ASN][1000 genomes]
rs2028576	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2028577	0.93[ASN][1000 genomes]
rs2028578	0.93[ASN][1000 genomes]
rs2044143	0.86[ASN][1000 genomes]
rs2044144	0.86[ASN][1000 genomes]
rs2060658	0.91[JPT][hapmap]
rs2069214	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2083715	0.82[ASN][1000 genomes]
rs2099877	0.82[ASN][1000 genomes]
rs2119991	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2278628	0.93[ASN][1000 genomes]
rs2278630	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2278632	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2278633	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2278634	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2403290	0.87[ASN][1000 genomes]
rs2920147	0.91[ASN][1000 genomes]
rs2957671	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957674	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3178898	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs34051776	0.86[ASN][1000 genomes]
rs34124136	0.90[ASN][1000 genomes]
rs34692066	0.86[ASN][1000 genomes]
rs35598338	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35737881	0.86[ASN][1000 genomes]
rs35815123	0.83[ASN][1000 genomes]
rs36167833	0.85[ASN][1000 genomes]
rs36170347	0.86[ASN][1000 genomes]
rs3814700	0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4076050	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4323860	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs4399321	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4418806	0.81[ASN][1000 genomes]
rs4442543	0.85[ASN][1000 genomes]
rs4444073	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4459296	0.83[ASN][1000 genomes]
rs4482025	0.81[ASN][1000 genomes]
rs4531462	0.88[ASN][1000 genomes]
rs4543988	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4597056	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4622247	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4641466	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4910115	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55893317	0.83[ASN][1000 genomes]
rs55933041	0.85[ASN][1000 genomes]
rs56063978	0.82[ASN][1000 genomes]
rs56319831	0.81[ASN][1000 genomes]
rs56758314	0.83[ASN][1000 genomes]
rs56776911	0.81[ASN][1000 genomes]
rs57153895	0.92[ASN][1000 genomes]
rs57520536	0.87[ASN][1000 genomes]
rs57521137	0.94[ASN][1000 genomes]
rs57522724	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57595438	0.96[ASN][1000 genomes]
rs57618276	0.85[ASN][1000 genomes]
rs57761181	0.81[ASN][1000 genomes]
rs58054521	0.81[ASN][1000 genomes]
rs58340019	0.98[ASN][1000 genomes]
rs58652557	0.80[ASN][1000 genomes]
rs59717668	0.91[ASN][1000 genomes]
rs59901009	0.81[ASN][1000 genomes]
rs60257382	0.80[ASN][1000 genomes]
rs60319025	0.96[ASN][1000 genomes]
rs60578195	0.93[ASN][1000 genomes]
rs61149838	0.93[ASN][1000 genomes]
rs61520995	0.85[ASN][1000 genomes]
rs61877260	0.81[ASN][1000 genomes]
rs61878625	0.80[ASN][1000 genomes]
rs61878627	0.85[ASN][1000 genomes]
rs61878628	0.85[ASN][1000 genomes]
rs61878631	0.84[ASN][1000 genomes]
rs61878632	0.85[ASN][1000 genomes]
rs61878634	0.85[ASN][1000 genomes]
rs61878638	0.81[ASN][1000 genomes]
rs61889798	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889955	0.84[ASN][1000 genomes]
rs6483969	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs6484012	0.86[ASN][1000 genomes]
rs6484147	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6484148	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6484152	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6484161	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7107290	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7107399	0.86[ASN][1000 genomes]
rs7107727	0.90[ASN][1000 genomes]
rs7107951	0.80[ASN][1000 genomes]
rs7108358	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7110652	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7115142	0.91[ASN][1000 genomes]
rs7116147	0.86[ASN][1000 genomes]
rs7118500	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7123728	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7124925	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7129047	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7129531	0.82[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs716803	0.84[ASN][1000 genomes]
rs721008	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs726102	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72860548	0.84[ASN][1000 genomes]
rs73412899	0.89[ASN][1000 genomes]
rs73415015	0.89[ASN][1000 genomes]
rs7479039	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7924631	0.80[ASN][1000 genomes]
rs7927874	0.92[ASN][1000 genomes]
rs7933018	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935242	0.90[ASN][1000 genomes]
rs7936409	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7938543	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7946649	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7947666	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7952105	0.86[ASN][1000 genomes]
rs7952229	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9735682	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
3	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10279800-10287800	Weak transcription	Left Ventricle	heart
8	chr11:10280600-10287200	Weak transcription	Ovary	ovary
9	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:10282800-10285600	Enhancers	NHLF	lung
11	chr11:10283000-10284400	Enhancers	HUVEC	blood vessel
12	chr11:10283000-10286200	Enhancers	NHDF-Ad	bronchial
13	chr11:10283000-10286200	Enhancers	Osteobl	bone
14	chr11:10283400-10286000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10283600-10284800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:10283600-10285600	Weak transcription	A549	lung
17	chr11:10283600-10291000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:10283800-10285000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10283800-10285400	Weak transcription	HSMM	muscle
20	chr11:10283800-10285600	Weak transcription	NH-A	brain
21	chr11:10284000-10290400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:10284200-10284600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:10284200-10285000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr11:10284200-10285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:10284200-10285200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:10284200-10285400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:10284200-10285400	Weak transcription	NHEK	skin
28	chr11:10284200-10287200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links