Variant report

Variant	rs7938543
Chromosome Location	chr11:10229851-10229852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10229449..10231323-chr11:10326514..10328045,2	MCF-7	breast:
2	chr11:10227925..10230421-chr11:10313078..10316314,3	MCF-7	breast:
3	chr11:10229392..10230937-chr11:10329172..10330174,5	MCF-7	breast:
4	chr11:10229694..10230273-chr11:10387954..10388668,2	MCF-7	breast:
5	chr11:10229196..10230420-chr11:10329036..10329749,4	K562	blood:
6	chr11:10226516..10229103-chr11:10229118..10231466,3	MCF-7	breast:
7	chr11:10228745..10232588-chr11:10322997..10326616,6	MCF-7	breast:
8	chr11:10229751..10230298-chr11:10344311..10345132,3	K562	blood:
9	chr11:10228277..10231249-chr11:10328543..10331201,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction
ENSG00000133812	Chromatin interaction
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 237 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10160247	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10160669	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10160692	0.81[ASN][1000 genomes]
rs10500718	0.81[ASN][1000 genomes]
rs10500719	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10500720	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10500721	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10500722	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10500723	0.95[JPT][hapmap]
rs10500724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10734652	0.86[YRI][hapmap]
rs10743131	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10743132	0.84[ASN][1000 genomes]
rs10743133	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10770085	0.82[EUR][1000 genomes]
rs10770096	0.85[EUR][1000 genomes]
rs10770104	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10770105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]
rs10770106	0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs10840369	0.84[YRI][hapmap]
rs10840379	0.84[ASN][1000 genomes]
rs10840380	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10840381	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840382	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840384	0.84[ASN][1000 genomes]
rs10840385	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042650	0.81[ASN][1000 genomes]
rs11042652	0.82[ASN][1000 genomes]
rs11042653	0.82[ASN][1000 genomes]
rs11042656	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042657	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042659	0.84[ASN][1000 genomes]
rs11042661	0.84[ASN][1000 genomes]
rs11042662	0.90[ASN][1000 genomes]
rs11042663	0.84[ASN][1000 genomes]
rs11042664	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042666	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042686	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11042687	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042689	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042703	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042712	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042716	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11042719	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042721	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1115454	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11602090	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11607174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607621	0.84[ASN][1000 genomes]
rs11821308	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12274104	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12275224	0.84[ASN][1000 genomes]
rs12277662	0.81[ASN][1000 genomes]
rs12278680	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12278735	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12279861	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12280005	0.84[ASN][1000 genomes]
rs12281409	0.82[ASN][1000 genomes]
rs12281432	0.85[CEU][hapmap]
rs12281526	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12282974	0.82[ASN][1000 genomes]
rs12284884	0.84[ASN][1000 genomes]
rs12286545	0.82[ASN][1000 genomes]
rs12286927	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12287386	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12288200	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12288275	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12288486	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12288654	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12290748	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12291196	0.82[ASN][1000 genomes]
rs12291198	0.82[ASN][1000 genomes]
rs12291253	0.81[ASN][1000 genomes]
rs12293757	0.81[ASN][1000 genomes]
rs12418690	0.84[ASN][1000 genomes]
rs12419064	0.87[ASN][1000 genomes]
rs12419593	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421666	0.86[ASN][1000 genomes]
rs13377397	0.81[ASN][1000 genomes]
rs1372809	0.85[CEU][hapmap]
rs1442733	0.84[ASN][1000 genomes]
rs1442734	0.82[ASN][1000 genomes]
rs1442736	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1442738	0.93[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16907462	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16907471	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16907481	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16907493	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16907504	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16907515	0.81[ASN][1000 genomes]
rs16907519	0.81[ASN][1000 genomes]
rs16907527	0.81[ASN][1000 genomes]
rs16907528	0.81[ASN][1000 genomes]
rs16907533	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16907544	0.82[ASN][1000 genomes]
rs16907552	0.82[ASN][1000 genomes]
rs16907554	0.82[ASN][1000 genomes]
rs16907561	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16907564	0.84[ASN][1000 genomes]
rs16907568	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16907575	0.82[ASN][1000 genomes]
rs16907615	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16907635	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1812853	0.82[ASN][1000 genomes]
rs1822294	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1822295	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1867136	0.84[ASN][1000 genomes]
rs1867137	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1867138	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2028575	0.81[ASN][1000 genomes]
rs2028576	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2028577	0.81[ASN][1000 genomes]
rs2028578	0.81[ASN][1000 genomes]
rs2044143	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2044144	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2060658	0.96[CEU][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2069214	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2083715	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083716	0.91[EUR][1000 genomes]
rs2083717	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2119991	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2197170	0.81[CEU][hapmap]
rs2278628	0.81[ASN][1000 genomes]
rs2278630	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2278632	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2278633	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2278634	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2920147	0.91[ASN][1000 genomes]
rs2957671	0.84[ASN][1000 genomes]
rs2957674	0.84[ASN][1000 genomes]
rs2957699	0.84[ASN][1000 genomes]
rs3178898	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs34051776	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34087225	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34692066	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34739790	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35598338	0.84[ASN][1000 genomes]
rs35737881	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35752075	0.86[ASN][1000 genomes]
rs36167833	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36170347	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3814700	0.95[JPT][hapmap]
rs4076050	0.90[JPT][hapmap]
rs4267063	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4323860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4399321	0.95[JPT][hapmap]
rs4418806	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4442543	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4444073	0.90[JPT][hapmap]
rs4482025	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4491213	0.85[ASN][1000 genomes]
rs4543988	0.81[ASN][1000 genomes]
rs4597056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4622247	0.81[ASN][1000 genomes]
rs4641466	0.95[JPT][hapmap]
rs4910097	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs4910107	0.93[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4910108	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4910115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55893317	0.87[ASN][1000 genomes]
rs55933041	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56063978	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56319831	0.86[ASN][1000 genomes]
rs56758314	0.88[ASN][1000 genomes]
rs56776911	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57521137	0.82[ASN][1000 genomes]
rs57595438	0.84[ASN][1000 genomes]
rs57761181	0.86[ASN][1000 genomes]
rs58054521	0.86[ASN][1000 genomes]
rs58340019	0.82[ASN][1000 genomes]
rs59829967	0.84[ASN][1000 genomes]
rs59901009	0.86[ASN][1000 genomes]
rs60319025	0.84[ASN][1000 genomes]
rs60578195	0.81[ASN][1000 genomes]
rs61149838	0.81[ASN][1000 genomes]
rs61877260	0.86[ASN][1000 genomes]
rs61878638	0.86[ASN][1000 genomes]
rs61889798	0.84[ASN][1000 genomes]
rs61889955	0.89[ASN][1000 genomes]
rs6483883	0.92[CEU][hapmap]
rs6483966	0.86[YRI][hapmap]
rs6483969	0.90[JPT][hapmap]
rs6484141	0.81[EUR][1000 genomes]
rs6484147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484160	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7102016	0.92[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs7106998	0.91[EUR][1000 genomes]
rs7107021	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7107040	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7107290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107399	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107951	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110312	0.89[YRI][hapmap]
rs7110652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111724	0.83[ASN][1000 genomes]
rs7115142	0.87[ASN][1000 genomes]
rs7115944	0.92[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7116147	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7118500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7122422	0.90[CHB][hapmap]
rs7123728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7124925	1.00[JPT][hapmap]
rs7128698	0.92[CEU][hapmap]
rs7129047	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7129531	0.83[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs716803	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs716804	0.82[CEU][hapmap]
rs721008	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs726102	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7479039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924499	0.84[EUR][1000 genomes]
rs7924631	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925889	0.80[JPT][hapmap]
rs7928170	0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs7933018	0.84[ASN][1000 genomes]
rs7936409	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7937758	0.83[CEU][hapmap]
rs7942420	0.83[EUR][1000 genomes]
rs7944706	0.92[CEU][hapmap]
rs7945930	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7946649	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7947588	0.82[EUR][1000 genomes]
rs7947666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950140	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7950461	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7952105	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952229	0.84[ASN][1000 genomes]
rs9645625	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9735682	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7938543	RP11-351I24.1	cis	Whole Blood	GTEx

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10226800-10230000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:10227000-10230200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:10227000-10230200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:10227000-10230400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:10227200-10230200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:10227400-10235600	Weak transcription	Psoas Muscle	Psoas
8	chr11:10227400-10240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:10227600-10232200	Weak transcription	Right Atrium	heart
10	chr11:10227600-10240200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10227800-10230000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10227800-10230200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:10227800-10239800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:10227800-10240000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:10227800-10242600	Weak transcription	Esophagus	oesophagus
16	chr11:10228200-10230400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:10228400-10230000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10228600-10230400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:10228800-10230000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10228800-10230200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:10228800-10232200	Enhancers	Fetal Lung	lung
22	chr11:10229200-10230000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:10229400-10230200	Enhancers	A549	lung
24	chr11:10229400-10230200	Enhancers	Hela-S3	cervix
25	chr11:10229400-10230400	Enhancers	NHLF	lung
26	chr11:10229400-10231200	Enhancers	HepG2	liver
27	chr11:10229600-10230000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:10229600-10230000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:10229600-10230000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:10229600-10230000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:10229600-10230200	Flanking Active TSS	NHDF-Ad	bronchial
32	chr11:10229600-10230200	Enhancers	Osteobl	bone
33	chr11:10229600-10231000	Enhancers	Dnd41	blood
34	chr11:10229600-10240200	Weak transcription	Fetal Stomach	stomach
35	chr11:10229800-10230200	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr11:10229800-10230200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:10229800-10230200	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:10229800-10230400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10229800-10230600	Weak transcription	Liver	Liver
40	chr11:10229800-10231400	Weak transcription	Ovary	ovary
41	chr11:10229800-10231600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links