Variant report

Variant	rs7942420
Chromosome Location	chr11:10103294-10103295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10734652	0.86[ASN][1000 genomes]
rs10770080	0.85[AMR][1000 genomes]
rs10770084	0.81[ASN][1000 genomes]
rs10770085	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10770087	0.83[ASN][1000 genomes]
rs10770090	0.80[ASN][1000 genomes]
rs10770096	0.93[EUR][1000 genomes]
rs10770104	0.82[EUR][1000 genomes]
rs10840339	0.81[AMR][1000 genomes]
rs10840342	0.81[AMR][1000 genomes]
rs10840349	0.81[ASN][1000 genomes]
rs10840353	0.81[ASN][1000 genomes]
rs10840354	0.80[ASN][1000 genomes]
rs10840357	0.84[ASN][1000 genomes]
rs10840358	0.84[ASN][1000 genomes]
rs10840360	0.89[ASN][1000 genomes]
rs10840363	0.82[ASN][1000 genomes]
rs10840369	0.81[ASN][1000 genomes]
rs11042581	0.81[AMR][1000 genomes]
rs11042582	0.81[AMR][1000 genomes]
rs11042598	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042617	0.85[ASN][1000 genomes]
rs11042621	0.82[ASN][1000 genomes]
rs11042625	0.83[ASN][1000 genomes]
rs11600852	0.80[ASN][1000 genomes]
rs11602090	0.84[EUR][1000 genomes]
rs12288355	0.80[ASN][1000 genomes]
rs12295754	0.81[AMR][1000 genomes]
rs1442738	0.82[EUR][1000 genomes]
rs2083715	0.81[EUR][1000 genomes]
rs2083716	0.83[EUR][1000 genomes]
rs2083717	0.88[EUR][1000 genomes]
rs2403230	0.81[ASN][1000 genomes]
rs2403259	0.87[AMR][1000 genomes]
rs2403268	0.85[EUR][1000 genomes]
rs4267063	0.87[EUR][1000 genomes]
rs4284389	0.81[ASN][1000 genomes]
rs4309158	0.81[AMR][1000 genomes]
rs4316505	0.80[ASN][1000 genomes]
rs4323860	0.91[EUR][1000 genomes]
rs4350354	0.80[ASN][1000 genomes]
rs4366476	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4466825	0.83[ASN][1000 genomes]
rs4482025	0.84[EUR][1000 genomes]
rs4509749	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4635071	0.81[ASN][1000 genomes]
rs4910097	0.86[EUR][1000 genomes]
rs4910107	0.82[EUR][1000 genomes]
rs4910108	0.83[EUR][1000 genomes]
rs56063978	0.81[EUR][1000 genomes]
rs58623593	0.84[ASN][1000 genomes]
rs6483883	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6483964	0.84[ASN][1000 genomes]
rs6483965	0.84[ASN][1000 genomes]
rs6483966	0.90[ASN][1000 genomes]
rs6483970	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7102016	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7104821	0.84[ASN][1000 genomes]
rs7106328	0.84[ASN][1000 genomes]
rs7106491	0.80[ASN][1000 genomes]
rs7106998	0.84[EUR][1000 genomes]
rs7110312	0.86[ASN][1000 genomes]
rs7110664	0.82[ASN][1000 genomes]
rs7115944	0.82[EUR][1000 genomes]
rs7119000	0.84[ASN][1000 genomes]
rs7121704	0.80[ASN][1000 genomes]
rs7123728	0.90[EUR][1000 genomes]
rs7128698	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7129239	0.87[AMR][1000 genomes]
rs716803	0.80[EUR][1000 genomes]
rs7479039	0.83[EUR][1000 genomes]
rs7924499	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7928170	0.93[EUR][1000 genomes]
rs7932988	0.84[ASN][1000 genomes]
rs7938543	0.83[EUR][1000 genomes]
rs7938891	0.85[ASN][1000 genomes]
rs7939146	0.84[ASN][1000 genomes]
rs7947588	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7948166	0.84[ASN][1000 genomes]
rs7950140	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7950240	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7942420	RP11-351I24.1	cis	Whole Blood	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10105400	Weak transcription	Left Ventricle	heart
2	chr11:10098600-10108400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10101600-10105400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10101800-10108400	Weak transcription	Ovary	ovary
6	chr11:10102800-10106200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:10103000-10105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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