Variant report

Variant	rs4635071
Chromosome Location	chr11:10125615-10125616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10128601	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10734652	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10770082	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10770083	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10770084	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10770085	0.86[ASN][1000 genomes]
rs10770087	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10770088	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10770089	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10770090	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10770106	0.89[CEU][hapmap]
rs10840346	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840349	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840353	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840354	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840357	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840358	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840360	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840363	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840364	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840365	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10840368	0.93[ASN][1000 genomes]
rs10840369	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042602	0.89[EUR][1000 genomes]
rs11042617	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042620	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042621	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042622	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042625	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11042633	0.97[ASN][1000 genomes]
rs11042638	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042717	0.92[CEU][hapmap]
rs11600852	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12224149	0.96[ASN][1000 genomes]
rs12288355	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360854	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2403230	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2403264	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2403265	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2403290	0.92[EUR][1000 genomes]
rs4284389	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4316505	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4350354	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4366476	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4466825	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4509749	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58623593	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6483883	0.80[AFR][1000 genomes]
rs6483964	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6483965	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6483966	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6483970	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102016	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7104821	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106328	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106491	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107021	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7110312	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110664	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111072	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7119000	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7121704	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122422	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7125593	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7126376	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7128591	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7128698	0.80[AFR][1000 genomes]
rs7131203	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924499	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7932988	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7938891	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7939146	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7942420	0.81[ASN][1000 genomes]
rs7947588	0.89[ASN][1000 genomes]
rs7948166	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950140	0.87[ASN][1000 genomes]
rs7950240	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9645625	0.86[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4635071	RP11-351I24.1	cis	Whole Blood	GTEx

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10116800-10131000	Weak transcription	Gastric	stomach
2	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:10120400-10142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:10120600-10129200	Weak transcription	Psoas Muscle	Psoas
6	chr11:10120800-10131000	Weak transcription	A549	lung
7	chr11:10121000-10129800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:10121200-10130400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:10121400-10126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:10121400-10131200	Weak transcription	Liver	Liver
11	chr11:10122200-10127200	Weak transcription	Right Atrium	heart
12	chr11:10122200-10129000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:10122200-10129000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:10122200-10130800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:10122200-10131000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:10122200-10144200	Weak transcription	Left Ventricle	heart
17	chr11:10122200-10156400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:10122400-10126000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:10122400-10126000	Weak transcription	Lung	lung
20	chr11:10122400-10127800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:10122400-10129200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:10122400-10130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:10122400-10130800	Weak transcription	Fetal Lung	lung
24	chr11:10122400-10130800	Weak transcription	HSMM	muscle
25	chr11:10122400-10131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:10122400-10138600	Weak transcription	Esophagus	oesophagus
27	chr11:10122600-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:10122600-10130800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:10122800-10129000	Weak transcription	NHLF	lung
30	chr11:10122800-10130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:10122800-10130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:10122800-10131000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:10122800-10132800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:10122800-10141200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:10122800-10142600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:10123000-10126400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:10123000-10130200	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:10123000-10130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:10123200-10156400	Weak transcription	Fetal Intestine Small	intestine
40	chr11:10124800-10128000	Weak transcription	NHDF-Ad	bronchial
41	chr11:10125000-10126000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:10125400-10125800	Weak transcription	Aorta	Aorta
43	chr11:10125400-10126200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:10125400-10126200	Enhancers	Right Ventricle	heart
45	chr11:10125600-10126000	Weak transcription	Ovary	ovary

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