Variant report

Variant	rs10840364
Chromosome Location	chr11:10114943-10114944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10128601	0.83[EUR][1000 genomes]
rs10734652	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs10770080	0.86[JPT][hapmap]
rs10770082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10770083	0.81[EUR][1000 genomes]
rs10770084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10770087	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10770088	0.86[ASN][1000 genomes]
rs10770089	0.88[ASN][1000 genomes]
rs10770090	0.83[EUR][1000 genomes]
rs10770106	0.89[CEU][hapmap]
rs10840331	0.81[JPT][hapmap]
rs10840332	0.80[JPT][hapmap]
rs10840335	0.81[JPT][hapmap]
rs10840346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10840349	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840353	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840354	0.82[EUR][1000 genomes]
rs10840357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10840360	0.83[EUR][1000 genomes]
rs10840363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10840365	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840369	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs11042582	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs11042617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11042620	0.86[ASN][1000 genomes]
rs11042621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042625	0.83[EUR][1000 genomes]
rs11042633	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11042638	0.83[EUR][1000 genomes]
rs11042717	0.92[CEU][hapmap]
rs11600852	0.82[EUR][1000 genomes]
rs12224149	0.82[ASN][1000 genomes]
rs12288355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12360854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs1442738	0.86[JPT][hapmap]
rs2403230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2403259	0.86[JPT][hapmap]
rs2403264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes]
rs2403265	0.80[EUR][1000 genomes]
rs4284389	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4309158	0.81[JPT][hapmap]
rs4316505	0.82[EUR][1000 genomes]
rs4350354	0.82[EUR][1000 genomes]
rs4366476	0.83[EUR][1000 genomes]
rs4466825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4509749	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs4635071	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4910097	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs58623593	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6483964	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6483965	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6483966	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs6483970	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7102016	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7104821	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106328	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7106491	0.82[EUR][1000 genomes]
rs7107021	0.96[CEU][hapmap]
rs7110312	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7110664	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7115944	0.85[JPT][hapmap]
rs7119000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7121704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7122422	0.89[CEU][hapmap]
rs7125593	0.82[EUR][1000 genomes]
rs7126376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs7128591	0.82[EUR][1000 genomes]
rs7131203	0.83[EUR][1000 genomes]
rs7928170	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7932988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7938891	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7939146	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7948166	0.84[ASN][1000 genomes]
rs7950140	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs7950240	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9645625	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10840364	RP11-351I24.1	cis	Whole Blood	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10109600-10117000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:10110400-10116200	Weak transcription	Ovary	ovary
4	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:10110400-10122200	Weak transcription	HSMM	muscle
6	chr11:10112000-10119200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:10112400-10122000	Weak transcription	NHLF	lung
8	chr11:10113200-10119200	Weak transcription	Fetal Brain Male	brain
9	chr11:10113400-10118600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:10113400-10119400	Weak transcription	Fetal Lung	lung
11	chr11:10113800-10118400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:10114000-10118600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:10114400-10118600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:10114800-10120000	Weak transcription	Monocytes-CD14+_RO01746	blood

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