Variant report

Variant	rs6484141
Chromosome Location	chr11:10282091-10282092
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10743131	0.85[EUR][1000 genomes]
rs10743133	0.81[EUR][1000 genomes]
rs10770104	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10840380	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840381	0.81[EUR][1000 genomes]
rs10840382	0.81[EUR][1000 genomes]
rs10840385	0.80[EUR][1000 genomes]
rs11042687	0.84[EUR][1000 genomes]
rs11042702	0.85[EUR][1000 genomes]
rs11042703	0.85[EUR][1000 genomes]
rs11042716	0.80[EUR][1000 genomes]
rs12279861	0.84[EUR][1000 genomes]
rs12290748	0.84[EUR][1000 genomes]
rs12419593	0.85[EUR][1000 genomes]
rs1442738	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2044143	0.85[EUR][1000 genomes]
rs2044144	0.84[EUR][1000 genomes]
rs2083715	0.84[EUR][1000 genomes]
rs2083716	0.86[EUR][1000 genomes]
rs34051776	0.81[EUR][1000 genomes]
rs35737881	0.82[EUR][1000 genomes]
rs36167833	0.81[EUR][1000 genomes]
rs4442543	0.80[EUR][1000 genomes]
rs4597056	0.84[EUR][1000 genomes]
rs4910097	0.80[EUR][1000 genomes]
rs4910107	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4910108	0.87[EUR][1000 genomes]
rs4910115	0.85[EUR][1000 genomes]
rs55933041	0.84[EUR][1000 genomes]
rs56063978	0.84[EUR][1000 genomes]
rs6484147	0.81[EUR][1000 genomes]
rs6484152	0.81[EUR][1000 genomes]
rs7106998	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7107040	0.80[EUR][1000 genomes]
rs7107290	0.81[EUR][1000 genomes]
rs7115944	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7116147	0.85[EUR][1000 genomes]
rs7118500	0.83[EUR][1000 genomes]
rs716803	0.82[EUR][1000 genomes]
rs726102	0.84[EUR][1000 genomes]
rs7938543	0.81[EUR][1000 genomes]
rs7945930	0.80[EUR][1000 genomes]
rs7947666	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6484141	RP11-351I24.1	cis	Whole Blood	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10277600-10283000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:10277600-10283000	Weak transcription	HUVEC	blood vessel
6	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
7	chr11:10278000-10282800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:10278000-10283200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:10278200-10283000	Weak transcription	HSMM	muscle
10	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:10278800-10283000	Weak transcription	Osteobl	bone
13	chr11:10279000-10283000	Weak transcription	NHDF-Ad	bronchial
14	chr11:10279000-10283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:10279800-10282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10279800-10287800	Weak transcription	Left Ventricle	heart
19	chr11:10280600-10287200	Weak transcription	Ovary	ovary
20	chr11:10280800-10282200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:10281000-10282600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:10281000-10283200	Weak transcription	A549	lung
23	chr11:10281000-10284200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:10281200-10282800	Weak transcription	NHLF	lung
25	chr11:10281200-10283000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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