Variant report

Variant	rs4597056
Chromosome Location	chr11:10290923-10290924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10284644..10286841-chr11:10289235..10291262,2	MCF-7	breast:

Extended variants
information (count: 206 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10160247	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs10160669	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs10500719	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs10500720	0.95[JPT][hapmap]
rs10500721	0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10500722	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10500723	0.91[JPT][hapmap]
rs10500724	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10734652	0.86[YRI][hapmap]
rs10743131	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743132	0.86[ASN][1000 genomes]
rs10743133	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10770096	0.81[EUR][1000 genomes]
rs10770104	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10770105	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.99[ASN][1000 genomes]
rs10770106	1.00[ASW][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap]
rs10840369	0.86[YRI][hapmap]
rs10840379	0.86[ASN][1000 genomes]
rs10840380	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10840381	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840382	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840384	0.85[ASN][1000 genomes]
rs10840385	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11042652	0.81[ASN][1000 genomes]
rs11042653	0.81[ASN][1000 genomes]
rs11042656	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11042657	0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11042659	0.82[ASN][1000 genomes]
rs11042661	0.82[ASN][1000 genomes]
rs11042662	0.89[ASN][1000 genomes]
rs11042663	0.82[ASN][1000 genomes]
rs11042664	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11042666	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11042686	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11042687	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042689	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042703	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042712	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11042714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042716	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042717	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11042719	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11042721	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1115454	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11602090	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11607174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607621	0.86[ASN][1000 genomes]
rs11821308	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12274104	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12275224	0.82[ASN][1000 genomes]
rs12278680	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12278735	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12279861	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12280005	0.83[ASN][1000 genomes]
rs12281409	0.84[ASN][1000 genomes]
rs12281432	0.82[CEU][hapmap]
rs12281526	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12282974	0.84[ASN][1000 genomes]
rs12284884	0.82[ASN][1000 genomes]
rs12286545	0.84[ASN][1000 genomes]
rs12286927	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12287386	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12288200	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12288275	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12288486	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12288654	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12290748	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291196	0.81[ASN][1000 genomes]
rs12291198	0.81[ASN][1000 genomes]
rs12418690	0.86[ASN][1000 genomes]
rs12419064	0.89[ASN][1000 genomes]
rs12419593	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421666	0.84[ASN][1000 genomes]
rs1372809	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs1442733	0.82[ASN][1000 genomes]
rs1442734	0.81[ASN][1000 genomes]
rs1442736	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1442738	0.92[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16907462	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs16907471	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16907481	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16907493	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16907504	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16907533	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs16907544	0.81[ASN][1000 genomes]
rs16907552	0.81[ASN][1000 genomes]
rs16907554	0.81[ASN][1000 genomes]
rs16907561	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs16907564	0.82[ASN][1000 genomes]
rs16907568	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs16907575	0.84[ASN][1000 genomes]
rs16907615	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16907635	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1812853	0.80[ASN][1000 genomes]
rs1822294	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1822295	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1867136	0.83[ASN][1000 genomes]
rs1867137	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1867138	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2028576	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2044143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044144	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060658	0.96[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2069214	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2083715	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2083716	0.91[EUR][1000 genomes]
rs2083717	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2119991	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2197170	0.80[CEU][hapmap]
rs2278630	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2278632	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2278633	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2278634	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2920147	0.92[ASN][1000 genomes]
rs2957671	0.86[ASN][1000 genomes]
rs2957674	0.86[ASN][1000 genomes]
rs2957699	0.86[ASN][1000 genomes]
rs3178898	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs34051776	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087225	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34692066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34739790	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35598338	0.86[ASN][1000 genomes]
rs35737881	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35752075	0.87[ASN][1000 genomes]
rs36167833	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36170347	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814700	0.90[JPT][hapmap]
rs4076050	0.95[JPT][hapmap]
rs4267063	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4323860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4399321	0.90[JPT][hapmap]
rs4418806	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4442543	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4444073	0.95[JPT][hapmap]
rs4482025	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4491213	0.86[ASN][1000 genomes]
rs4641466	0.90[JPT][hapmap]
rs4910097	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4910107	0.92[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4910108	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4910115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893317	0.86[ASN][1000 genomes]
rs55933041	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56063978	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56319831	0.84[ASN][1000 genomes]
rs56758314	0.86[ASN][1000 genomes]
rs56776911	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57521137	0.81[ASN][1000 genomes]
rs57522724	0.81[ASN][1000 genomes]
rs57595438	0.82[ASN][1000 genomes]
rs57761181	0.84[ASN][1000 genomes]
rs58054521	0.84[ASN][1000 genomes]
rs58340019	0.84[ASN][1000 genomes]
rs59829967	0.83[ASN][1000 genomes]
rs59901009	0.84[ASN][1000 genomes]
rs60319025	0.82[ASN][1000 genomes]
rs61877260	0.84[ASN][1000 genomes]
rs61878638	0.84[ASN][1000 genomes]
rs61889798	0.86[ASN][1000 genomes]
rs61889955	0.87[ASN][1000 genomes]
rs6483966	0.86[YRI][hapmap]
rs6483969	0.85[JPT][hapmap]
rs6484141	0.84[EUR][1000 genomes]
rs6484147	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484160	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7102016	0.92[CEU][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap]
rs7106998	0.89[EUR][1000 genomes]
rs7107040	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107290	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107399	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107951	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110312	0.89[YRI][hapmap]
rs7110652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111724	0.81[ASN][1000 genomes]
rs7115142	0.88[ASN][1000 genomes]
rs7115944	0.92[CEU][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7116147	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7124925	1.00[JPT][hapmap]
rs7129047	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7129531	0.83[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs716803	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs716804	0.82[CEU][hapmap]
rs721008	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs726102	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7924631	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7928170	0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs7933018	0.86[ASN][1000 genomes]
rs7937758	0.82[CEU][hapmap]
rs7938543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944706	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs7945930	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7946649	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7947666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950461	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7952105	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952229	0.85[ASN][1000 genomes]
rs9735682	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4597056	RP11-351I24.1	cis	Whole Blood	GTEx
rs4597056	DKK3	cis	cerebellum	SCAN
rs4597056	SYT9	cis	cerebellum	SCAN
rs4597056	B3GALNT1	trans	parietal	SCAN
rs4597056	TRIM66	cis	cerebellum	SCAN
rs4597056	LYVE1	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
3	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:10281200-10295000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:10283600-10291000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10285400-10303400	Weak transcription	Fetal Intestine Large	intestine
10	chr11:10287600-10306200	Weak transcription	Psoas Muscle	Psoas
11	chr11:10287800-10295400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:10288000-10295000	Weak transcription	Ovary	ovary
13	chr11:10288600-10294400	Weak transcription	Placenta	Placenta
14	chr11:10288800-10291200	Enhancers	HSMM	muscle
15	chr11:10289000-10291200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:10289000-10291200	Enhancers	A549	lung
17	chr11:10289000-10291400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:10289200-10291000	Enhancers	NHDF-Ad	bronchial
19	chr11:10289200-10299200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:10289400-10299200	Weak transcription	Small Intestine	intestine
21	chr11:10289600-10291400	Enhancers	Osteobl	bone
22	chr11:10289800-10291200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10290000-10291200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:10290000-10291200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
26	chr11:10290200-10291400	Enhancers	NHLF	lung
27	chr11:10290400-10291000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:10290400-10291200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:10290400-10291200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr11:10290400-10291200	Enhancers	Hela-S3	cervix
31	chr11:10290400-10291400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:10290600-10291000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr11:10290600-10291200	Enhancers	Stomach Mucosa	stomach
34	chr11:10290600-10291200	Enhancers	NHEK	skin
35	chr11:10290600-10291400	Enhancers	HMEC	breast
36	chr11:10290800-10291400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:10290800-10291400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle

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