The 2.0 version of rSNPBase

Variant report

Variant rs12421666
Chromosome Location chr11:10183340-10183341
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:10170600-10189000 Weak transcription Left Ventricle heart
2 chr11:10176200-10184000 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr11:10177800-10183800 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr11:10178000-10183600 Weak transcription Right Ventricle heart
5 chr11:10178200-10185400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr11:10178200-10213400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr11:10180200-10186200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr11:10181200-10191400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr11:10181800-10183800 Enhancers Osteobl bone
10 chr11:10182000-10186600 Enhancers NHDF-Ad bronchial
11 chr11:10182000-10187400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr11:10182200-10183400 Enhancers HMEC breast
13 chr11:10182200-10183600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr11:10182200-10184600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr11:10182200-10185800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr11:10182400-10183600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr11:10182400-10183600 Enhancers Adipose Nuclei Adipose
18 chr11:10182400-10184400 Weak transcription NHLF lung
19 chr11:10182800-10184600 Enhancers HSMMtube muscle
20 chr11:10183000-10184600 Enhancers Brain Substantia Nigra brain
21 chr11:10183000-10185000 Enhancers Breast Myoepithelial Primary Cells Breast
22 chr11:10183000-10186000 Weak transcription Hela-S3 cervix
23 chr11:10183000-10186200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr11:10183000-10186800 Weak transcription Brain Cingulate Gyrus brain
25 chr11:10183200-10183600 Enhancers Ovary ovary
26 chr11:10183200-10184200 Weak transcription Colon Smooth Muscle Colon
27 chr11:10183200-10185400 Weak transcription NHEK skin
28 chr11:10183200-10186400 Weak transcription A549 lung

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Last update: Aug 31, 2015