Variant report

Variant	rs16907528
Chromosome Location	chr11:10188725-10188726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10186305..10188747-chr11:10324257..10326433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 199 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:196)

rs_ID	r²[population]
rs10160247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500721	0.90[ASN][1000 genomes]
rs10500722	0.81[ASN][1000 genomes]
rs10500723	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500724	0.80[ASN][1000 genomes]
rs10743132	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10840379	0.93[ASN][1000 genomes]
rs10840384	0.92[ASN][1000 genomes]
rs10840386	0.86[ASN][1000 genomes]
rs11042586	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042602	0.81[ASN][1000 genomes]
rs11042650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042661	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042662	0.87[ASN][1000 genomes]
rs11042663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042666	0.96[ASN][1000 genomes]
rs11042686	0.91[ASN][1000 genomes]
rs11042689	0.93[ASN][1000 genomes]
rs11042716	0.80[ASN][1000 genomes]
rs11042717	0.86[ASN][1000 genomes]
rs11042725	0.82[ASN][1000 genomes]
rs1135372	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1135374	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11607621	0.93[ASN][1000 genomes]
rs11821308	0.88[ASN][1000 genomes]
rs12273935	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12274104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275224	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277662	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278680	0.95[ASN][1000 genomes]
rs12278735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12280005	0.96[ASN][1000 genomes]
rs12281409	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282974	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12284884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286545	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291253	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12293757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294455	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12418690	0.93[ASN][1000 genomes]
rs12421666	0.88[ASN][1000 genomes]
rs13377226	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13377297	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13377305	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13377397	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377398	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1442734	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442735	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1442736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907462	0.92[ASN][1000 genomes]
rs16907471	0.93[ASN][1000 genomes]
rs16907481	0.93[ASN][1000 genomes]
rs16907483	0.93[ASN][1000 genomes]
rs16907493	0.94[ASN][1000 genomes]
rs16907496	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907498	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907500	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907503	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907504	0.94[ASN][1000 genomes]
rs16907509	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16907515	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907519	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907533	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907575	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907615	0.93[ASN][1000 genomes]
rs16907635	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1812853	0.84[ASN][1000 genomes]
rs1822294	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822295	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867136	0.96[ASN][1000 genomes]
rs1867137	0.96[ASN][1000 genomes]
rs1867138	0.96[ASN][1000 genomes]
rs2028575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069214	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083717	0.80[ASN][1000 genomes]
rs2099877	0.89[ASN][1000 genomes]
rs2119991	0.96[ASN][1000 genomes]
rs2278628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278633	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278634	0.89[ASN][1000 genomes]
rs2403290	0.89[ASN][1000 genomes]
rs2920147	0.84[ASN][1000 genomes]
rs2957671	0.93[ASN][1000 genomes]
rs2957674	0.93[ASN][1000 genomes]
rs2957699	0.93[ASN][1000 genomes]
rs3178898	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34124136	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34984386	0.83[ASN][1000 genomes]
rs35598338	0.93[ASN][1000 genomes]
rs35815123	0.90[ASN][1000 genomes]
rs3814700	0.85[ASN][1000 genomes]
rs4267063	0.80[ASN][1000 genomes]
rs4399321	0.85[ASN][1000 genomes]
rs4459296	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4482025	0.83[ASN][1000 genomes]
rs4531462	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4543988	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4622247	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641466	0.85[ASN][1000 genomes]
rs55893317	0.90[ASN][1000 genomes]
rs56319831	0.88[ASN][1000 genomes]
rs56758314	0.90[ASN][1000 genomes]
rs57153895	0.85[ASN][1000 genomes]
rs57520536	0.94[ASN][1000 genomes]
rs57521137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57522724	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57595438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57618276	0.92[ASN][1000 genomes]
rs57761181	0.88[ASN][1000 genomes]
rs58054521	0.88[ASN][1000 genomes]
rs58340019	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58652557	0.87[ASN][1000 genomes]
rs58842960	0.83[ASN][1000 genomes]
rs59717668	0.88[ASN][1000 genomes]
rs59829967	0.87[ASN][1000 genomes]
rs59901009	0.88[ASN][1000 genomes]
rs60257382	0.87[ASN][1000 genomes]
rs60319025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60578195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61149838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61520995	0.92[ASN][1000 genomes]
rs61877260	0.88[ASN][1000 genomes]
rs61878580	0.83[ASN][1000 genomes]
rs61878581	0.83[ASN][1000 genomes]
rs61878584	0.85[ASN][1000 genomes]
rs61878585	0.85[ASN][1000 genomes]
rs61878625	0.87[ASN][1000 genomes]
rs61878627	0.92[ASN][1000 genomes]
rs61878628	0.92[ASN][1000 genomes]
rs61878631	0.91[ASN][1000 genomes]
rs61878632	0.92[ASN][1000 genomes]
rs61878634	0.92[ASN][1000 genomes]
rs61878638	0.88[ASN][1000 genomes]
rs61889798	0.93[ASN][1000 genomes]
rs61889955	0.90[ASN][1000 genomes]
rs6483969	0.85[ASN][1000 genomes]
rs6484012	0.93[ASN][1000 genomes]
rs7105321	0.86[ASN][1000 genomes]
rs7107021	0.80[ASN][1000 genomes]
rs7107727	0.88[ASN][1000 genomes]
rs7111724	0.85[ASN][1000 genomes]
rs7115142	0.84[ASN][1000 genomes]
rs7124925	0.93[ASN][1000 genomes]
rs7129047	0.93[ASN][1000 genomes]
rs7129531	0.88[ASN][1000 genomes]
rs721008	0.94[ASN][1000 genomes]
rs72860548	0.91[ASN][1000 genomes]
rs73412899	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73415015	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479039	0.81[ASN][1000 genomes]
rs7926678	0.82[ASN][1000 genomes]
rs7927874	0.85[ASN][1000 genomes]
rs7931957	0.82[ASN][1000 genomes]
rs7933018	0.93[ASN][1000 genomes]
rs7935242	0.83[ASN][1000 genomes]
rs7936409	0.83[ASN][1000 genomes]
rs7938534	0.85[ASN][1000 genomes]
rs7938543	0.81[ASN][1000 genomes]
rs7938932	0.84[ASN][1000 genomes]
rs7939064	0.83[ASN][1000 genomes]
rs7946649	0.85[ASN][1000 genomes]
rs7952229	0.92[ASN][1000 genomes]
rs9888170	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:10184600-10192000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:10186200-10191000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:10187200-10191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10187200-10192400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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