Variant report

Variant	rs61878581
Chromosome Location	chr11:10083808-10083809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10160247	0.83[ASN][1000 genomes]
rs10160669	0.83[ASN][1000 genomes]
rs10160692	0.83[ASN][1000 genomes]
rs10500716	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10500718	0.83[ASN][1000 genomes]
rs10500719	0.83[ASN][1000 genomes]
rs10500720	0.81[ASN][1000 genomes]
rs10840368	0.85[EUR][1000 genomes]
rs11042586	0.84[ASN][1000 genomes]
rs11042602	0.96[ASN][1000 genomes]
rs11042633	0.87[EUR][1000 genomes]
rs11042650	0.83[ASN][1000 genomes]
rs11042652	0.82[ASN][1000 genomes]
rs11042653	0.82[ASN][1000 genomes]
rs11042656	0.80[ASN][1000 genomes]
rs11042657	0.80[ASN][1000 genomes]
rs11042659	0.80[ASN][1000 genomes]
rs11042661	0.80[ASN][1000 genomes]
rs11042663	0.80[ASN][1000 genomes]
rs11042664	0.80[ASN][1000 genomes]
rs11042666	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1135372	0.82[ASN][1000 genomes]
rs1135374	0.84[ASN][1000 genomes]
rs11825114	0.84[AMR][1000 genomes]
rs12224149	0.87[EUR][1000 genomes]
rs12274104	0.82[ASN][1000 genomes]
rs12275224	0.80[ASN][1000 genomes]
rs12278735	0.82[ASN][1000 genomes]
rs12280005	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12281526	0.80[ASN][1000 genomes]
rs12284884	0.80[ASN][1000 genomes]
rs12286927	0.82[ASN][1000 genomes]
rs12287386	0.82[ASN][1000 genomes]
rs12288275	0.80[ASN][1000 genomes]
rs12288486	0.82[ASN][1000 genomes]
rs12288654	0.80[ASN][1000 genomes]
rs12291196	0.82[ASN][1000 genomes]
rs12291198	0.82[ASN][1000 genomes]
rs12291253	0.80[ASN][1000 genomes]
rs12293757	0.83[ASN][1000 genomes]
rs13377397	0.83[ASN][1000 genomes]
rs1442733	0.80[ASN][1000 genomes]
rs1442736	0.80[ASN][1000 genomes]
rs16907334	0.86[AMR][1000 genomes]
rs16907407	0.82[AMR][1000 genomes]
rs16907410	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16907417	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16907462	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907471	0.90[ASN][1000 genomes]
rs16907481	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16907483	0.88[ASN][1000 genomes]
rs16907493	0.89[ASN][1000 genomes]
rs16907496	0.84[ASN][1000 genomes]
rs16907498	0.84[ASN][1000 genomes]
rs16907500	0.84[ASN][1000 genomes]
rs16907503	0.84[ASN][1000 genomes]
rs16907504	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907509	0.83[ASN][1000 genomes]
rs16907515	0.83[ASN][1000 genomes]
rs16907519	0.83[ASN][1000 genomes]
rs16907527	0.83[ASN][1000 genomes]
rs16907528	0.83[ASN][1000 genomes]
rs16907533	0.83[ASN][1000 genomes]
rs16907544	0.82[ASN][1000 genomes]
rs16907552	0.82[ASN][1000 genomes]
rs16907554	0.82[ASN][1000 genomes]
rs16907561	0.80[ASN][1000 genomes]
rs16907564	0.80[ASN][1000 genomes]
rs16907568	0.80[ASN][1000 genomes]
rs1867136	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867137	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867138	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2028575	0.83[ASN][1000 genomes]
rs2028576	0.83[ASN][1000 genomes]
rs2028577	0.83[ASN][1000 genomes]
rs2028578	0.83[ASN][1000 genomes]
rs2099877	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119991	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2278628	0.83[ASN][1000 genomes]
rs2278630	0.83[ASN][1000 genomes]
rs2278632	0.83[ASN][1000 genomes]
rs2278633	0.83[ASN][1000 genomes]
rs2403263	0.82[AMR][1000 genomes]
rs2403267	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2403290	0.89[ASN][1000 genomes]
rs2896513	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2896515	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2896517	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3178898	0.84[ASN][1000 genomes]
rs34124136	0.85[ASN][1000 genomes]
rs34984386	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35815123	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4543988	0.83[ASN][1000 genomes]
rs4622247	0.83[ASN][1000 genomes]
rs56850765	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57520536	0.89[ASN][1000 genomes]
rs57521137	0.82[ASN][1000 genomes]
rs57595438	0.80[ASN][1000 genomes]
rs57618276	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58652557	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58842960	0.97[ASN][1000 genomes]
rs60257382	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60319025	0.80[ASN][1000 genomes]
rs60578195	0.83[ASN][1000 genomes]
rs61149838	0.83[ASN][1000 genomes]
rs61520995	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61877012	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61877040	0.83[AMR][1000 genomes]
rs61877045	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61878580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878584	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61878585	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61878625	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61878627	0.91[ASN][1000 genomes]
rs61878628	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61878631	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61878632	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61878634	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6483969	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484012	0.85[ASN][1000 genomes]
rs67132348	0.81[AMR][1000 genomes]
rs7105321	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107021	0.95[ASN][1000 genomes]
rs7113715	0.83[AMR][1000 genomes]
rs7122422	0.84[ASN][1000 genomes]
rs7124925	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128234	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7129047	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs721008	0.89[ASN][1000 genomes]
rs72860548	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73412899	0.84[ASN][1000 genomes]
rs73415015	0.84[ASN][1000 genomes]
rs7926678	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930920	0.82[AMR][1000 genomes]
rs7931957	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7936409	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938534	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938932	0.96[ASN][1000 genomes]
rs7939064	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946649	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7949164	0.85[AMR][1000 genomes]
rs7949322	0.80[AMR][1000 genomes]
rs9645625	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10089200	Weak transcription	Ovary	ovary
3	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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