Variant report

Variant	rs7930920
Chromosome Location	chr11:10016370-10016371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10500716	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042586	0.89[ASN][1000 genomes]
rs11825114	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576008	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16907334	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907407	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16907410	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907417	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16907462	0.80[AMR][1000 genomes]
rs16907481	0.80[AMR][1000 genomes]
rs16907504	0.84[AMR][1000 genomes]
rs2403261	0.82[ASN][1000 genomes]
rs2403263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403267	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2896513	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2896514	0.82[ASN][1000 genomes]
rs2896515	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2896517	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34984386	0.80[AMR][1000 genomes]
rs35815123	0.80[AMR][1000 genomes]
rs4910091	0.84[ASN][1000 genomes]
rs4910092	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56850765	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57180563	0.89[ASN][1000 genomes]
rs57618276	0.80[AMR][1000 genomes]
rs58652557	0.80[AMR][1000 genomes]
rs59479500	0.82[ASN][1000 genomes]
rs60257382	0.80[AMR][1000 genomes]
rs61520995	0.80[AMR][1000 genomes]
rs61877009	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61877010	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61877012	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61877018	0.82[ASN][1000 genomes]
rs61877040	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61877045	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61878580	0.82[AMR][1000 genomes]
rs61878581	0.82[AMR][1000 genomes]
rs61878584	0.80[AMR][1000 genomes]
rs61878585	0.80[AMR][1000 genomes]
rs61878625	0.82[AMR][1000 genomes]
rs61878628	0.80[AMR][1000 genomes]
rs61878631	0.80[AMR][1000 genomes]
rs61878634	0.80[AMR][1000 genomes]
rs6483969	0.80[AMR][1000 genomes]
rs67132348	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7105321	0.80[AMR][1000 genomes]
rs7106234	0.84[ASN][1000 genomes]
rs7107916	0.90[ASN][1000 genomes]
rs7113715	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121157	0.84[ASN][1000 genomes]
rs7124925	0.80[AMR][1000 genomes]
rs7128234	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7128838	0.99[ASN][1000 genomes]
rs7129047	0.80[AMR][1000 genomes]
rs72860548	0.80[AMR][1000 genomes]
rs7926141	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7936409	0.80[AMR][1000 genomes]
rs7938534	0.80[AMR][1000 genomes]
rs7939064	0.80[AMR][1000 genomes]
rs7940348	0.83[ASN][1000 genomes]
rs7946649	0.80[AMR][1000 genomes]
rs7949164	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949322	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9888170	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
4	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
8	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
10	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
17	chr11:10004000-10020000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:10004400-10020200	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:10004400-10021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:10004400-10024200	Weak transcription	NHLF	lung
22	chr11:10004600-10021800	Weak transcription	Esophagus	oesophagus
23	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:10004800-10021800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:10004800-10023000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
28	chr11:10004800-10023800	Weak transcription	Osteobl	bone
29	chr11:10004800-10024800	Weak transcription	HSMM	muscle
30	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:10005200-10017600	Weak transcription	HMEC	breast
32	chr11:10005200-10021400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:10005200-10021400	Weak transcription	Placenta	Placenta
34	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
35	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:10005400-10017200	Weak transcription	Fetal Intestine Small	intestine
38	chr11:10005400-10022800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
44	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:10005600-10024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:10005800-10024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links