Variant report

Variant	rs2403267
Chromosome Location	chr11:10041064-10041065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10160247	0.84[CHB][hapmap]
rs10160669	0.82[CHB][hapmap]
rs10500716	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500719	0.82[CHB][hapmap]
rs10500720	0.80[JPT][hapmap]
rs11042575	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs11042586	0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11042602	0.80[ASN][1000 genomes]
rs11042656	0.82[CHB][hapmap]
rs11042657	0.81[CHB][hapmap]
rs11042664	0.84[CHB][hapmap]
rs11042666	0.82[CHB][hapmap]
rs11825114	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12274104	0.84[CHB][hapmap]
rs12278680	0.82[CHB][hapmap]
rs12278735	0.84[CHB][hapmap]
rs12281526	0.84[CHB][hapmap]
rs12286927	0.82[CHB][hapmap]
rs12287386	0.82[CHB][hapmap]
rs12288200	0.82[CHB][hapmap]
rs12288275	0.82[CHB][hapmap]
rs12288486	0.84[CHB][hapmap]
rs12288654	0.82[CHB][hapmap]
rs12576008	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1442736	0.84[CHB][hapmap]
rs16907329	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs16907334	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16907417	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907462	0.83[CHB][hapmap];0.83[AMR][1000 genomes]
rs16907471	0.84[CHB][hapmap]
rs16907481	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs16907493	0.82[CHB][hapmap]
rs16907504	0.84[CHB][hapmap]
rs16907533	0.82[CHB][hapmap]
rs16907561	0.82[CHB][hapmap]
rs16907568	0.82[CHB][hapmap]
rs1822294	0.84[CHB][hapmap]
rs1822295	0.82[CHB][hapmap]
rs1867137	0.82[CHB][hapmap]
rs1867138	0.82[CHB][hapmap]
rs2028576	0.83[CHB][hapmap]
rs2069214	0.82[CHB][hapmap]
rs2099877	0.81[AMR][1000 genomes]
rs2278630	0.84[CHB][hapmap]
rs2278632	0.82[CHB][hapmap]
rs2278633	0.84[CHB][hapmap]
rs2403261	0.80[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2403263	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2896513	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896514	0.88[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2896515	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896517	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3178898	0.84[CHB][hapmap]
rs34984386	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35815123	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4910090	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4910092	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56850765	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57618276	0.83[AMR][1000 genomes]
rs58652557	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs58842960	0.81[ASN][1000 genomes]
rs59479500	0.94[ASN][1000 genomes]
rs60257382	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61520995	0.83[AMR][1000 genomes]
rs61877012	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61877018	0.84[ASN][1000 genomes]
rs61877040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61877043	0.91[ASN][1000 genomes]
rs61877045	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61878580	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61878581	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61878584	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61878585	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61878625	0.84[AMR][1000 genomes]
rs61878628	0.83[AMR][1000 genomes]
rs61878631	0.83[AMR][1000 genomes]
rs61878632	0.81[AMR][1000 genomes]
rs61878634	0.83[AMR][1000 genomes]
rs6483969	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67132348	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7103902	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7105321	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7106234	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7107021	1.00[YRI][hapmap]
rs7107302	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7107916	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7113715	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7122422	1.00[YRI][hapmap]
rs7124925	0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs7128234	0.95[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128838	0.84[ASN][1000 genomes]
rs7129047	0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs7130610	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs713402	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs721008	0.84[CHB][hapmap]
rs72860548	0.83[AMR][1000 genomes]
rs7925889	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7926678	0.84[AMR][1000 genomes]
rs7930920	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7931957	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7932484	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7935297	0.89[ASN][1000 genomes]
rs7936409	0.83[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7936461	0.90[ASN][1000 genomes]
rs7938534	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7939064	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7940348	0.84[ASN][1000 genomes]
rs7946649	0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7949164	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7949322	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9645625	0.83[JPT][hapmap]
rs9888170	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:10010600-10051200	Weak transcription	Ovary	ovary
9	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
10	chr11:10024200-10047800	Weak transcription	Osteobl	bone
11	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
12	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
13	chr11:10030400-10042600	Weak transcription	Fetal Lung	lung
14	chr11:10030600-10047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10030600-10051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:10030600-10054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:10030600-10065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:10030800-10041800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:10032800-10049200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:10033200-10042400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:10034000-10047000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:10034400-10047800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10034600-10043200	Weak transcription	Fetal Intestine Large	intestine
24	chr11:10035000-10041400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:10035000-10041600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:10035000-10041800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:10035200-10041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:10035200-10043200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:10035200-10065800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:10035400-10051200	Weak transcription	Psoas Muscle	Psoas
31	chr11:10035600-10044400	Weak transcription	NHDF-Ad	bronchial
32	chr11:10035800-10041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:10035800-10041800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:10035800-10052800	Weak transcription	Spleen	Spleen
35	chr11:10036000-10049000	Weak transcription	Placenta	Placenta
36	chr11:10036000-10055600	Weak transcription	NHEK	skin
37	chr11:10036200-10047800	Weak transcription	NHLF	lung
38	chr11:10036200-10062800	Weak transcription	Adipose Nuclei	Adipose
39	chr11:10037400-10043000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:10037400-10043200	Weak transcription	Liver	Liver
41	chr11:10037600-10048000	Weak transcription	Fetal Stomach	stomach
42	chr11:10037600-10049400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:10037800-10043000	Weak transcription	A549	lung
44	chr11:10038000-10047800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:10038200-10047600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:10039200-10041400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:10039400-10047400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:10039600-10041600	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:10039800-10041200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:10039800-10041400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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