Variant report

Variant	rs7128234
Chromosome Location	chr11:10022585-10022586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10160247	0.82[JPT][hapmap]
rs10160669	0.81[JPT][hapmap]
rs10500716	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500719	0.81[JPT][hapmap]
rs10500720	0.85[JPT][hapmap]
rs11042575	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11042586	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11042602	0.82[ASN][1000 genomes]
rs11042656	0.81[JPT][hapmap]
rs11042657	0.81[JPT][hapmap]
rs11042664	0.81[JPT][hapmap]
rs11821308	0.81[JPT][hapmap]
rs11825114	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12274104	0.82[JPT][hapmap]
rs12278735	0.82[JPT][hapmap]
rs12281526	0.81[JPT][hapmap]
rs12286927	0.81[JPT][hapmap]
rs12287386	0.81[JPT][hapmap]
rs12288200	0.81[JPT][hapmap]
rs12288275	0.81[JPT][hapmap]
rs12288486	0.82[JPT][hapmap]
rs12288654	0.81[JPT][hapmap]
rs12576008	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1442736	0.81[JPT][hapmap]
rs16907329	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs16907334	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907407	0.94[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16907410	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907417	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16907462	0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs16907471	0.81[JPT][hapmap]
rs16907481	0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs16907493	0.81[JPT][hapmap]
rs16907504	0.82[JPT][hapmap]
rs16907533	0.81[JPT][hapmap]
rs16907561	0.81[JPT][hapmap]
rs16907568	0.81[JPT][hapmap]
rs2028576	0.80[JPT][hapmap]
rs2069214	0.81[JPT][hapmap]
rs2099877	0.81[AMR][1000 genomes]
rs2278630	0.81[JPT][hapmap]
rs2278632	0.81[JPT][hapmap]
rs2278633	0.84[JPT][hapmap]
rs2278634	0.82[JPT][hapmap]
rs2403261	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2403263	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2403267	0.95[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2896513	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2896514	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2896515	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2896517	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3178898	0.81[JPT][hapmap]
rs34984386	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35815123	0.86[AMR][1000 genomes]
rs4910090	0.80[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4910091	0.82[ASN][1000 genomes]
rs4910092	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56850765	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57180563	0.81[ASN][1000 genomes]
rs57618276	0.83[AMR][1000 genomes]
rs58652557	0.86[AMR][1000 genomes]
rs58842960	0.82[ASN][1000 genomes]
rs59479500	0.91[ASN][1000 genomes]
rs60257382	0.86[AMR][1000 genomes]
rs61520995	0.83[AMR][1000 genomes]
rs61877010	0.81[EUR][1000 genomes]
rs61877012	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61877018	0.90[ASN][1000 genomes]
rs61877040	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61877043	0.84[ASN][1000 genomes]
rs61877045	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61878580	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61878581	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61878584	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61878585	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61878625	0.84[AMR][1000 genomes]
rs61878628	0.83[AMR][1000 genomes]
rs61878631	0.83[AMR][1000 genomes]
rs61878632	0.81[AMR][1000 genomes]
rs61878634	0.83[AMR][1000 genomes]
rs6483969	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67132348	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103902	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7105321	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7106234	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7107021	1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs7107302	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7107916	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7113715	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7121157	0.82[ASN][1000 genomes]
rs7122422	1.00[YRI][hapmap]
rs7124925	0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs7128838	0.90[ASN][1000 genomes]
rs7129047	0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs7130610	0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs713402	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs721008	0.82[JPT][hapmap]
rs72860548	0.83[AMR][1000 genomes]
rs7925889	0.88[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7926141	0.82[ASN][1000 genomes]
rs7926678	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7930920	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7931957	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7932484	0.94[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7935297	0.86[ASN][1000 genomes]
rs7936409	0.81[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7936461	0.82[ASN][1000 genomes]
rs7938534	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7938932	0.81[ASN][1000 genomes]
rs7939064	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7940348	0.90[ASN][1000 genomes]
rs7946649	0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7949164	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7949322	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9645625	0.89[JPT][hapmap]
rs9888170	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
5	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
6	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
12	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
13	chr11:10004400-10024200	Weak transcription	NHLF	lung
14	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
15	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:10004800-10023000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
18	chr11:10004800-10023800	Weak transcription	Osteobl	bone
19	chr11:10004800-10024800	Weak transcription	HSMM	muscle
20	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
22	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:10005400-10022800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
30	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:10005600-10024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:10005800-10024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:10009400-10024200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:10009600-10022600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
42	chr11:10010600-10051200	Weak transcription	Ovary	ovary
43	chr11:10011200-10027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:10011600-10024600	Weak transcription	HepG2	liver
45	chr11:10011600-10027200	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:10011600-10028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:10012000-10024800	Weak transcription	Fetal Intestine Large	intestine
48	chr11:10012000-10026200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
50	chr11:10013400-10026600	Weak transcription	A549	lung

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