Variant report

Variant	rs12576008
Chromosome Location	chr11:9999151-9999152
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10500716	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs11042575	0.96[YRI][hapmap]
rs11825114	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907334	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907407	0.94[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs16907410	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16907417	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2403263	0.96[EUR][1000 genomes]
rs2403267	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs2896513	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs2896515	0.88[EUR][1000 genomes]
rs2896517	0.85[EUR][1000 genomes]
rs4910092	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61877009	0.83[EUR][1000 genomes]
rs61877010	0.86[EUR][1000 genomes]
rs61877012	0.93[EUR][1000 genomes]
rs61877040	0.85[EUR][1000 genomes]
rs61877045	0.86[EUR][1000 genomes]
rs67132348	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7106234	0.80[CEU][hapmap]
rs7113715	0.96[EUR][1000 genomes]
rs7128234	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7926141	0.80[AFR][1000 genomes]
rs7930920	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7932484	0.92[YRI][hapmap]
rs7949164	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7949322	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9979800-9999200	Weak transcription	NH-A	brain
3	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
6	chr11:9981400-10002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:9981400-10003400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:9981400-10003400	Weak transcription	NHEK	skin
9	chr11:9981400-10003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
11	chr11:9981400-10004200	Weak transcription	Lung	lung
12	chr11:9981400-10004400	Weak transcription	HepG2	liver
13	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
14	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:9981400-10014800	Weak transcription	Dnd41	blood
16	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
18	chr11:9981600-10003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:9981800-10003400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:9981800-10004800	Weak transcription	Ovary	ovary
21	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
22	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
24	chr11:9984800-9999200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:9985800-10000600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:9985800-10004000	Weak transcription	Placenta	Placenta
27	chr11:9985800-10004200	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
31	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
32	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:9987200-10003600	Weak transcription	Hela-S3	cervix
34	chr11:9987600-10002600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:9989400-10004000	Weak transcription	Fetal Stomach	stomach
36	chr11:9990000-10002600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:9990000-10012600	Weak transcription	Liver	Liver
39	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
42	chr11:9990600-10003800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:9995000-10003600	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:9995400-10004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:9996000-9999200	Weak transcription	NHLF	lung
49	chr11:9996000-9999400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:9996000-10004200	Weak transcription	H1 Cell Line	embryonic stem cell

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