Variant report

Variant	rs61877040
Chromosome Location	chr11:10031276-10031277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10500716	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042586	0.94[ASN][1000 genomes]
rs11825114	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12576008	0.85[EUR][1000 genomes]
rs16907334	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16907407	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907410	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907417	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16907504	0.82[AMR][1000 genomes]
rs2403261	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2403263	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2403267	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2896513	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2896514	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2896515	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896517	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4910092	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56850765	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59479500	0.97[ASN][1000 genomes]
rs61877012	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61877018	0.86[ASN][1000 genomes]
rs61877043	0.89[ASN][1000 genomes]
rs61877045	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61878580	0.83[AMR][1000 genomes]
rs61878581	0.83[AMR][1000 genomes]
rs61878584	0.80[ASN][1000 genomes]
rs61878585	0.80[ASN][1000 genomes]
rs6483969	0.80[ASN][1000 genomes]
rs67132348	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7113715	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7128234	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128838	0.84[ASN][1000 genomes]
rs7130610	0.87[ASN][1000 genomes]
rs7925889	0.88[ASN][1000 genomes]
rs7930920	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7932484	0.91[ASN][1000 genomes]
rs7935297	0.91[ASN][1000 genomes]
rs7936409	0.80[ASN][1000 genomes]
rs7936461	0.87[ASN][1000 genomes]
rs7938534	0.80[ASN][1000 genomes]
rs7940348	0.85[ASN][1000 genomes]
rs7946649	0.80[ASN][1000 genomes]
rs7949164	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949322	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9888170	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:10010600-10051200	Weak transcription	Ovary	ovary
9	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
10	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:10024200-10047800	Weak transcription	Osteobl	bone
15	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
16	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
17	chr11:10030400-10031600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10030400-10032800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:10030400-10034400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:10030400-10042600	Weak transcription	Fetal Lung	lung
21	chr11:10030600-10032800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:10030600-10033600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:10030600-10047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:10030600-10051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:10030600-10054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:10030600-10065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:10030800-10033600	Weak transcription	Fetal Stomach	stomach
28	chr11:10030800-10041800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:10031000-10033400	Weak transcription	HSMM	muscle

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