Variant report

Variant	rs59479500
Chromosome Location	chr11:10032985-10032986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10500716	0.96[ASN][1000 genomes]
rs11042586	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1135372	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1135374	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12293757	0.82[EUR][1000 genomes]
rs16907407	0.82[ASN][1000 genomes]
rs16907410	0.93[ASN][1000 genomes]
rs16907471	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907483	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907493	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907496	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16907498	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907500	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16907503	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16907509	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16907515	0.81[AMR][1000 genomes]
rs16907519	0.81[AMR][1000 genomes]
rs1822294	0.81[EUR][1000 genomes]
rs1822295	0.81[EUR][1000 genomes]
rs2278628	0.82[EUR][1000 genomes]
rs2278630	0.82[EUR][1000 genomes]
rs2278632	0.82[EUR][1000 genomes]
rs2278633	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2403261	0.82[ASN][1000 genomes]
rs2403263	0.82[ASN][1000 genomes]
rs2403267	0.94[ASN][1000 genomes]
rs2896513	0.92[ASN][1000 genomes]
rs2896514	0.83[ASN][1000 genomes]
rs2896515	0.90[ASN][1000 genomes]
rs2896517	0.97[ASN][1000 genomes]
rs3178898	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34124136	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4543988	0.83[AMR][1000 genomes]
rs4622247	0.83[AMR][1000 genomes]
rs4910092	0.81[ASN][1000 genomes]
rs56850765	0.89[ASN][1000 genomes]
rs57520536	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57522724	0.81[EUR][1000 genomes]
rs58842960	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877012	0.80[ASN][1000 genomes]
rs61877018	0.83[ASN][1000 genomes]
rs61877040	0.97[ASN][1000 genomes]
rs61877043	0.86[ASN][1000 genomes]
rs61877045	0.89[ASN][1000 genomes]
rs6484012	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67132348	0.84[ASN][1000 genomes]
rs7113715	0.82[ASN][1000 genomes]
rs7128234	0.91[ASN][1000 genomes]
rs7128838	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7130610	0.85[ASN][1000 genomes]
rs721008	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73412899	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73415015	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7925889	0.85[ASN][1000 genomes]
rs7930920	0.82[ASN][1000 genomes]
rs7932484	0.88[ASN][1000 genomes]
rs7935297	0.88[ASN][1000 genomes]
rs7936461	0.85[ASN][1000 genomes]
rs7938932	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7940348	0.82[ASN][1000 genomes]
rs7949164	0.82[ASN][1000 genomes]
rs9888170	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:10010600-10051200	Weak transcription	Ovary	ovary
9	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
10	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:10024200-10047800	Weak transcription	Osteobl	bone
12	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
13	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
14	chr11:10030400-10034400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10030400-10042600	Weak transcription	Fetal Lung	lung
16	chr11:10030600-10033600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:10030600-10047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:10030600-10051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:10030600-10054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:10030600-10065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:10030800-10033600	Weak transcription	Fetal Stomach	stomach
22	chr11:10030800-10041800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:10031000-10033400	Weak transcription	HSMM	muscle
24	chr11:10031600-10036000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10032400-10035000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:10032800-10033000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:10032800-10033200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:10032800-10033200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:10032800-10035000	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr11:10032800-10035400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr11:10032800-10036000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10032800-10049200	Weak transcription	Fetal Muscle Trunk	muscle

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