Variant report

Variant	rs56850765
Chromosome Location	chr11:10050776-10050777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10500716	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11042586	0.97[ASN][1000 genomes]
rs11042602	0.85[ASN][1000 genomes]
rs11825114	0.87[ASN][1000 genomes]
rs16907334	0.87[ASN][1000 genomes]
rs16907407	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16907410	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907417	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907462	0.84[AMR][1000 genomes]
rs16907481	0.84[AMR][1000 genomes]
rs16907504	0.91[AMR][1000 genomes]
rs2099877	0.83[AMR][1000 genomes]
rs2403261	0.88[ASN][1000 genomes]
rs2403263	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2403267	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2896513	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2896514	0.89[ASN][1000 genomes]
rs2896515	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2896517	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34984386	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35815123	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4910091	0.80[ASN][1000 genomes]
rs4910092	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57618276	0.84[AMR][1000 genomes]
rs58652557	0.84[AMR][1000 genomes]
rs58842960	0.85[ASN][1000 genomes]
rs59479500	0.89[ASN][1000 genomes]
rs60257382	0.84[AMR][1000 genomes]
rs61520995	0.84[AMR][1000 genomes]
rs61877012	0.87[ASN][1000 genomes]
rs61877018	0.89[ASN][1000 genomes]
rs61877040	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61877043	0.87[ASN][1000 genomes]
rs61877045	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878580	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61878581	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61878584	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61878585	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61878625	0.86[AMR][1000 genomes]
rs61878628	0.84[AMR][1000 genomes]
rs61878631	0.84[AMR][1000 genomes]
rs61878632	0.83[AMR][1000 genomes]
rs61878634	0.84[AMR][1000 genomes]
rs6483969	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67132348	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67404901	0.82[AFR][1000 genomes]
rs7105321	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7106234	0.80[ASN][1000 genomes]
rs7107021	0.84[ASN][1000 genomes]
rs7107916	0.80[ASN][1000 genomes]
rs7113715	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7121157	0.80[ASN][1000 genomes]
rs7124925	0.84[AMR][1000 genomes]
rs7128234	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128838	0.88[ASN][1000 genomes]
rs7129047	0.84[AMR][1000 genomes]
rs7130610	0.85[ASN][1000 genomes]
rs72860548	0.84[AMR][1000 genomes]
rs7925889	0.86[ASN][1000 genomes]
rs7926141	0.81[ASN][1000 genomes]
rs7926678	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7930920	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7931957	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7932484	0.84[ASN][1000 genomes]
rs7935297	0.84[ASN][1000 genomes]
rs7936409	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7936461	0.85[ASN][1000 genomes]
rs7938534	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7938932	0.84[ASN][1000 genomes]
rs7939064	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7940348	0.89[ASN][1000 genomes]
rs7946649	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7949164	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7949322	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9645625	0.83[ASN][1000 genomes]
rs9888170	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
4	chr11:10010600-10051200	Weak transcription	Ovary	ovary
5	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
6	chr11:10030600-10051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:10030600-10054000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:10030600-10065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:10035200-10065800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:10035400-10051200	Weak transcription	Psoas Muscle	Psoas
11	chr11:10035800-10052800	Weak transcription	Spleen	Spleen
12	chr11:10036000-10055600	Weak transcription	NHEK	skin
13	chr11:10036200-10062800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:10040400-10065800	Weak transcription	HSMM	muscle
15	chr11:10042000-10052200	Weak transcription	Esophagus	oesophagus
16	chr11:10042000-10052800	Weak transcription	Lung	lung
17	chr11:10042000-10053400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:10042000-10055800	Weak transcription	HMEC	breast
19	chr11:10042200-10054800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:10042200-10064400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:10042200-10066000	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:10042200-10066000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:10042200-10066200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:10042600-10066000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:10042800-10054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:10043400-10051400	Weak transcription	Primary B cells from cord blood	blood
27	chr11:10043400-10051800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:10043400-10052000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:10043400-10065600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:10043800-10054400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:10043800-10061000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:10043800-10063800	Weak transcription	Primary T cells from cord blood	blood
33	chr11:10043800-10065400	Weak transcription	A549	lung
34	chr11:10043800-10065600	Weak transcription	HepG2	liver
35	chr11:10044600-10051200	Weak transcription	Thymus	Thymus
36	chr11:10044600-10051200	Weak transcription	HSMMtube	muscle
37	chr11:10045400-10052800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:10045800-10051400	Strong transcription	Liver	Liver
39	chr11:10045800-10052600	Weak transcription	Fetal Brain Female	brain
40	chr11:10046200-10053200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:10046400-10051600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:10046400-10054000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:10046400-10065800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:10046400-10065800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:10047000-10051400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:10047600-10052000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:10048400-10050800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:10048400-10051000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:10048400-10053800	Weak transcription	Fetal Stomach	stomach
50	chr11:10048600-10064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links