Variant report

Variant	rs7932484
Chromosome Location	chr11:10024883-10024884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10500716	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10500720	0.80[JPT][hapmap]
rs11042575	0.89[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs11042586	0.94[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11821308	0.85[AMR][1000 genomes]
rs11824183	0.82[AMR][1000 genomes]
rs12576008	0.92[YRI][hapmap]
rs16907329	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs16907334	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs16907407	0.87[CHB][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs16907410	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16907417	0.87[CHB][hapmap]
rs2403261	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2403267	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2896513	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2896514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2896515	0.85[ASN][1000 genomes]
rs2896517	0.87[ASN][1000 genomes]
rs4910090	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4910091	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4910092	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs56850765	0.84[ASN][1000 genomes]
rs57180563	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57761181	0.85[AMR][1000 genomes]
rs58054521	0.85[AMR][1000 genomes]
rs58687525	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59479500	0.88[ASN][1000 genomes]
rs59829967	0.83[AMR][1000 genomes]
rs61877018	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61877040	0.91[ASN][1000 genomes]
rs61877043	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61877045	0.84[ASN][1000 genomes]
rs61878638	0.83[AMR][1000 genomes]
rs67404901	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7103902	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7106234	0.81[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7107302	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7107916	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7121157	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7124925	0.81[JPT][hapmap]
rs7128234	0.94[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7130610	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs713402	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7925889	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs7926141	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7935297	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936461	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9645625	0.83[JPT][hapmap]
rs9888170	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
4	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
7	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
15	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
23	chr11:10010600-10051200	Weak transcription	Ovary	ovary
24	chr11:10011200-10027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:10011600-10027200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:10011600-10028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:10012000-10026200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
29	chr11:10013400-10026600	Weak transcription	A549	lung
30	chr11:10017600-10026400	Weak transcription	NHEK	skin
31	chr11:10017600-10027200	Weak transcription	Fetal Intestine Small	intestine
32	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:10020400-10026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:10020400-10027000	Weak transcription	Adipose Nuclei	Adipose
35	chr11:10020400-10027200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:10020400-10027200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:10020400-10027400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:10020400-10027600	Weak transcription	Fetal Lung	lung
39	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:10021600-10026200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:10021800-10030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:10022000-10026400	Weak transcription	Placenta	Placenta
43	chr11:10022200-10027400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:10022600-10027200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:10022600-10027800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:10024200-10047800	Weak transcription	Osteobl	bone
49	chr11:10024600-10025800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel

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