Variant report

Variant	rs4910090
Chromosome Location	chr11:10003290-10003291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10002720..10004321-chr11:10011527..10014066,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10160247	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10160669	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10500716	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10500719	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10500720	0.85[JPT][hapmap]
rs11042575	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11042586	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs11821308	0.81[JPT][hapmap]
rs11824183	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11825114	0.85[ASN][1000 genomes]
rs12099014	0.86[ASN][1000 genomes]
rs12287386	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12574585	0.87[ASN][1000 genomes]
rs12577989	0.86[ASN][1000 genomes]
rs16907318	0.90[ASN][1000 genomes]
rs16907329	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16907334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16907407	1.00[CHB][hapmap]
rs16907410	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs16907417	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs16907462	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs16907471	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs16907481	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs16907493	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs16907504	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs16907533	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2028576	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs2278630	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2278632	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2278633	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2278634	0.82[JPT][hapmap]
rs2403261	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2403267	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2896513	0.93[CHB][hapmap];0.95[JPT][hapmap]
rs2896514	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3178898	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4910091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4910092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs55927206	0.87[ASN][1000 genomes]
rs57017265	0.90[ASN][1000 genomes]
rs57180563	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58419649	0.86[ASN][1000 genomes]
rs58687525	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61877018	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61877043	0.80[EUR][1000 genomes]
rs67011375	0.81[ASN][1000 genomes]
rs7103902	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7106234	0.83[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107302	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7107916	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7114031	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7121157	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7124925	0.86[JPT][hapmap]
rs7128234	0.80[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7129047	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7130610	0.85[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs713402	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs721008	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs72855628	0.85[ASN][1000 genomes]
rs72855633	0.86[ASN][1000 genomes]
rs72855635	0.86[ASN][1000 genomes]
rs72855636	0.86[ASN][1000 genomes]
rs72855639	0.86[ASN][1000 genomes]
rs72855643	0.87[ASN][1000 genomes]
rs72855678	0.86[ASN][1000 genomes]
rs7925889	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7926141	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932484	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935297	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7936409	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7936461	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7940348	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7946649	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7949322	0.85[ASN][1000 genomes]
rs9645625	0.89[JPT][hapmap]
rs9888170	0.93[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
5	chr11:9981400-10003400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:9981400-10003400	Weak transcription	NHEK	skin
7	chr11:9981400-10003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
9	chr11:9981400-10004200	Weak transcription	Lung	lung
10	chr11:9981400-10004400	Weak transcription	HepG2	liver
11	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
12	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:9981400-10014800	Weak transcription	Dnd41	blood
14	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
16	chr11:9981600-10003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:9981800-10003400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:9981800-10004800	Weak transcription	Ovary	ovary
19	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
20	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
22	chr11:9985800-10004000	Weak transcription	Placenta	Placenta
23	chr11:9985800-10004200	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
27	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
28	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:9987200-10003600	Weak transcription	Hela-S3	cervix
30	chr11:9989400-10004000	Weak transcription	Fetal Stomach	stomach
31	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:9990000-10012600	Weak transcription	Liver	Liver
33	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
36	chr11:9990600-10003800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:9995000-10003600	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:9995400-10004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:9996000-10004200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:9999000-10004000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:9999200-10003600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:9999400-10004200	Weak transcription	Fetal Intestine Large	intestine
47	chr11:9999600-10003400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:9999600-10004200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:9999600-10010200	Weak transcription	Adipose Nuclei	Adipose
50	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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