Variant report

Variant	rs7114031
Chromosome Location	chr11:9967825-9967826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9967314..9969682-chr11:9973855..9976394,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11042575	0.88[ASN][1000 genomes]
rs11824183	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11825114	0.84[ASN][1000 genomes]
rs12099014	0.95[ASN][1000 genomes]
rs12574585	0.96[ASN][1000 genomes]
rs12577989	0.92[ASN][1000 genomes]
rs16907318	0.90[ASN][1000 genomes]
rs16907329	0.90[ASN][1000 genomes]
rs16907334	0.84[ASN][1000 genomes]
rs2403261	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2896514	0.83[ASN][1000 genomes]
rs4910090	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4910091	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4910092	0.82[ASN][1000 genomes]
rs55927206	0.93[ASN][1000 genomes]
rs57017265	0.90[ASN][1000 genomes]
rs57180563	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58419649	0.95[ASN][1000 genomes]
rs58687525	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61877018	0.83[ASN][1000 genomes]
rs67011375	0.95[ASN][1000 genomes]
rs7103902	0.96[ASN][1000 genomes]
rs7106234	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7107302	0.96[ASN][1000 genomes]
rs7107916	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7121157	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs713402	0.90[ASN][1000 genomes]
rs72855628	0.94[ASN][1000 genomes]
rs72855633	0.95[ASN][1000 genomes]
rs72855635	0.95[ASN][1000 genomes]
rs72855636	0.95[ASN][1000 genomes]
rs72855639	0.95[ASN][1000 genomes]
rs72855643	0.96[ASN][1000 genomes]
rs72855678	0.92[ASN][1000 genomes]
rs7926141	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7940348	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949322	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
2	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9944800-9969000	Weak transcription	Ovary	ovary
4	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:9952600-9968600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:9952800-9980200	Weak transcription	Aorta	Aorta
7	chr11:9952800-9980400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:9952800-9980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:9952800-9980600	Weak transcription	Spleen	Spleen
10	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:9953000-9969200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:9953000-9978200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:9953000-9979600	Weak transcription	Fetal Stomach	stomach
14	chr11:9953000-9980200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:9953000-9980200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:9953000-9980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:9953000-9980400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:9953000-9980400	Weak transcription	Esophagus	oesophagus
19	chr11:9958800-9978200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:9960600-9973400	Weak transcription	Fetal Heart	heart
21	chr11:9964400-9973600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:9964400-9980200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:9964800-9980400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:9965200-9975600	Weak transcription	HSMM	muscle
25	chr11:9965200-9981000	Weak transcription	HUVEC	blood vessel
26	chr11:9965400-9980200	Weak transcription	Liver	Liver
27	chr11:9965600-9973200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:9965600-9973400	Weak transcription	A549	lung
29	chr11:9965800-9973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:9966000-9975200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:9966000-9975600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:9966000-9980200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:9966000-9980200	Weak transcription	NHLF	lung
34	chr11:9966200-9980200	Weak transcription	Osteobl	bone
35	chr11:9966600-9968000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:9966600-9973200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:9967000-9968000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
38	chr11:9967400-9968000	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr11:9967600-9968000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr11:9967600-9968000	ZNF genes & repeats	Fetal Kidney	kidney
41	chr11:9967600-9968000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
42	chr11:9967600-9968000	ZNF genes & repeats	Dnd41	blood
43	chr11:9967600-9968000	Enhancers	NHDF-Ad	bronchial
44	chr11:9967600-9969800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:9967600-9980200	Weak transcription	Fetal Intestine Large	intestine
46	chr11:9967600-9980400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:9967800-9968000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:9967800-9968800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:9967800-9968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:9967800-9973800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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