Variant report

Variant	rs55927206
Chromosome Location	chr11:9988719-9988720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11042575	0.94[ASN][1000 genomes]
rs11824183	0.98[ASN][1000 genomes]
rs11825114	0.84[ASN][1000 genomes]
rs12099014	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574585	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12577989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16907318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907329	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907334	0.84[ASN][1000 genomes]
rs2403261	0.85[ASN][1000 genomes]
rs2896514	0.84[ASN][1000 genomes]
rs4910090	0.87[ASN][1000 genomes]
rs4910091	0.91[ASN][1000 genomes]
rs4910092	0.82[ASN][1000 genomes]
rs57017265	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57180563	0.83[ASN][1000 genomes]
rs58419649	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58687525	0.96[ASN][1000 genomes]
rs61877018	0.84[ASN][1000 genomes]
rs67011375	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103902	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106234	0.91[ASN][1000 genomes]
rs7107302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107916	0.83[ASN][1000 genomes]
rs7114031	0.93[ASN][1000 genomes]
rs7121157	0.91[ASN][1000 genomes]
rs713402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72855628	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72855633	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72855635	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72855636	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72855639	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72855643	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72855655	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72855678	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926141	0.84[ASN][1000 genomes]
rs7940348	0.86[ASN][1000 genomes]
rs7949322	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
3	chr11:9974200-9994400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:9974200-9994600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:9974200-9994800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:9974200-9999000	Weak transcription	Fetal Heart	heart
7	chr11:9974200-9999000	Weak transcription	HSMMtube	muscle
8	chr11:9977000-9994400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:9979400-9995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:9979600-9994600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:9979800-9999200	Weak transcription	NH-A	brain
12	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:9981200-9990000	Weak transcription	A549	lung
14	chr11:9981200-9990600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:9981200-9995000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
18	chr11:9981400-9989000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:9981400-9989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:9981400-9989600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:9981400-9990600	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:9981400-9990600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:9981400-9992200	Weak transcription	Brain Substantia Nigra	brain
24	chr11:9981400-9993400	Weak transcription	Spleen	Spleen
25	chr11:9981400-9994400	Weak transcription	HUVEC	blood vessel
26	chr11:9981400-9994600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:9981400-9994600	Weak transcription	NHLF	lung
28	chr11:9981400-9994800	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:9981400-9995200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:9981400-9995200	Weak transcription	Brain Angular Gyrus	brain
31	chr11:9981400-9995400	Weak transcription	Right Ventricle	heart
32	chr11:9981400-9999000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:9981400-10002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:9981400-10003400	Weak transcription	Brain Anterior Caudate	brain
35	chr11:9981400-10003400	Weak transcription	NHEK	skin
36	chr11:9981400-10003600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
38	chr11:9981400-10004200	Weak transcription	Lung	lung
39	chr11:9981400-10004400	Weak transcription	HepG2	liver
40	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
41	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:9981400-10014800	Weak transcription	Dnd41	blood
43	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
45	chr11:9981600-10003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:9981800-9993600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:9981800-9995200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:9981800-10003400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:9981800-10004800	Weak transcription	Ovary	ovary
50	chr11:9983200-9994600	Weak transcription	HSMM	muscle

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