Variant report

Variant	rs7107302
Chromosome Location	chr11:9978246-9978247
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10500716	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs11042575	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11042586	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs11821308	0.83[CHB][hapmap]
rs11824183	0.95[ASN][1000 genomes]
rs11825114	0.86[ASN][1000 genomes]
rs12099014	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574585	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907318	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907334	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16907407	0.94[CHB][hapmap]
rs16907410	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs16907417	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs16907462	0.81[JPT][hapmap]
rs16907471	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs16907481	0.81[JPT][hapmap]
rs16907493	1.00[ASW][hapmap];0.81[JPT][hapmap]
rs16907504	0.81[JPT][hapmap]
rs2403261	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2403267	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs2896513	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2896514	0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3178898	0.81[JPT][hapmap]
rs4910090	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4910091	0.91[ASN][1000 genomes]
rs4910092	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs55927206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57017265	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57180563	0.83[ASN][1000 genomes]
rs58419649	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58687525	0.93[ASN][1000 genomes]
rs61877018	0.84[ASN][1000 genomes]
rs67011375	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106234	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7107916	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7114031	0.96[ASN][1000 genomes]
rs7121157	0.91[ASN][1000 genomes]
rs7124925	0.85[JPT][hapmap]
rs7128234	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7129047	0.81[JPT][hapmap]
rs7130610	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs713402	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs721008	0.81[JPT][hapmap]
rs72855628	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72855633	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72855635	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72855636	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72855639	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72855643	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855655	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72855678	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925889	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7926141	0.84[ASN][1000 genomes]
rs7932484	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs7936409	0.80[JPT][hapmap]
rs7940348	0.86[ASN][1000 genomes]
rs7946649	0.81[JPT][hapmap]
rs7949322	0.86[ASN][1000 genomes]
rs9645625	0.88[JPT][hapmap];1.00[YRI][hapmap]
rs9888170	0.88[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
2	chr11:9943400-9980600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9950200-9980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:9952800-9980200	Weak transcription	Aorta	Aorta
5	chr11:9952800-9980400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:9952800-9980600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:9952800-9980600	Weak transcription	Spleen	Spleen
8	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:9953000-9979600	Weak transcription	Fetal Stomach	stomach
10	chr11:9953000-9980200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:9953000-9980200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:9953000-9980400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:9953000-9980400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:9953000-9980400	Weak transcription	Esophagus	oesophagus
15	chr11:9964400-9980200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:9964800-9980400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:9965200-9981000	Weak transcription	HUVEC	blood vessel
18	chr11:9965400-9980200	Weak transcription	Liver	Liver
19	chr11:9966000-9980200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:9966000-9980200	Weak transcription	NHLF	lung
21	chr11:9966200-9980200	Weak transcription	Osteobl	bone
22	chr11:9967600-9980200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:9967600-9980400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:9967800-9980200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:9967800-9980200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:9967800-9980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:9967800-9980400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:9968000-9979600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:9968000-9980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:9968000-9980400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:9968000-9980400	Weak transcription	Dnd41	blood
32	chr11:9968000-9984000	Weak transcription	Primary B cells from cord blood	blood
33	chr11:9968000-9984200	Weak transcription	Fetal Kidney	kidney
34	chr11:9968200-9980200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:9968200-9980200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:9968200-9980400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:9968400-9980400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:9968600-9980200	Weak transcription	Fetal Brain Female	brain
39	chr11:9969200-9980400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:9969400-9980200	Weak transcription	Ovary	ovary
41	chr11:9969400-9980400	Weak transcription	Brain Substantia Nigra	brain
42	chr11:9969800-9979600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:9970800-9980200	Weak transcription	Right Ventricle	heart
44	chr11:9972400-9980200	Weak transcription	Fetal Intestine Small	intestine
45	chr11:9972400-9980200	Weak transcription	Placenta	Placenta
46	chr11:9972800-9980600	Weak transcription	Gastric	stomach
47	chr11:9973000-9986000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:9973200-9980400	Weak transcription	HepG2	liver
49	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
50	chr11:9974000-9980200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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