Variant report

Variant	rs10160669
Chromosome Location	chr11:10186589-10186590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10186305..10188747-chr11:10324257..10326433,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADM-2	chr11:10186506-10186656	ENSG00000254865.1

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 241 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:238)

rs_ID	r²[population]
rs10160247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500716	0.94[CHD][hapmap]
rs10500718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500720	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500721	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10500722	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10500723	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500724	0.84[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10743132	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10770105	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10770106	0.90[JPT][hapmap]
rs10840379	0.93[ASN][1000 genomes]
rs10840384	0.92[ASN][1000 genomes]
rs10840386	0.86[ASN][1000 genomes]
rs11042575	0.81[JPT][hapmap]
rs11042586	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042602	0.81[ASN][1000 genomes]
rs11042650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042661	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042662	0.87[ASN][1000 genomes]
rs11042663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042666	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs11042686	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11042689	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11042702	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11042714	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11042716	0.80[ASN][1000 genomes]
rs11042717	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11042721	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs11042725	0.82[ASN][1000 genomes]
rs1135372	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1135374	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11607174	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11607621	0.93[ASN][1000 genomes]
rs11821308	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12273935	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12274104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275224	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277662	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278680	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12278735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12280005	0.96[ASN][1000 genomes]
rs12281409	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282974	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12284884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286545	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288200	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288275	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288654	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291253	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12293757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294455	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12418690	0.93[ASN][1000 genomes]
rs12421666	0.88[ASN][1000 genomes]
rs13377226	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13377297	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13377305	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13377397	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377398	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1442734	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442735	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1442736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907329	0.81[JPT][hapmap]
rs16907334	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs16907407	0.83[CHB][hapmap];0.92[CHD][hapmap]
rs16907410	0.80[CHB][hapmap]
rs16907417	0.83[CHB][hapmap];0.92[CHD][hapmap]
rs16907462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16907471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16907481	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16907483	0.93[ASN][1000 genomes]
rs16907493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[ASN][1000 genomes]
rs16907496	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907498	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907500	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907503	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16907504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16907509	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16907515	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907519	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907533	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907568	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907575	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907615	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16907635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1812853	0.84[ASN][1000 genomes]
rs1822294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867136	0.96[ASN][1000 genomes]
rs1867137	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs1867138	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs2028575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060658	0.90[JPT][hapmap]
rs2069214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083717	0.80[ASN][1000 genomes]
rs2099877	0.89[ASN][1000 genomes]
rs2119991	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs2278628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278630	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278634	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2403261	0.81[JPT][hapmap]
rs2403267	0.82[CHB][hapmap]
rs2403290	0.89[ASN][1000 genomes]
rs2896513	0.92[CHD][hapmap];0.86[JPT][hapmap]
rs2896514	0.86[JPT][hapmap]
rs2920147	0.84[ASN][1000 genomes]
rs2957671	0.93[ASN][1000 genomes]
rs2957674	0.93[ASN][1000 genomes]
rs2957699	0.93[ASN][1000 genomes]
rs3178898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34124136	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34984386	0.83[ASN][1000 genomes]
rs35598338	0.93[ASN][1000 genomes]
rs35815123	0.90[ASN][1000 genomes]
rs3814700	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4076050	1.00[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap]
rs4267063	0.80[ASN][1000 genomes]
rs4323860	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs4399321	0.92[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4444073	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs4459296	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4482025	0.83[ASN][1000 genomes]
rs4531462	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4543988	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597056	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs4622247	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641466	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4910090	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4910092	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4910115	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs55893317	0.90[ASN][1000 genomes]
rs56319831	0.88[ASN][1000 genomes]
rs56758314	0.90[ASN][1000 genomes]
rs57153895	0.85[ASN][1000 genomes]
rs57520536	0.94[ASN][1000 genomes]
rs57521137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57522724	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57595438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57618276	0.92[ASN][1000 genomes]
rs57761181	0.88[ASN][1000 genomes]
rs58054521	0.88[ASN][1000 genomes]
rs58340019	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58652557	0.87[ASN][1000 genomes]
rs58842960	0.83[ASN][1000 genomes]
rs59717668	0.88[ASN][1000 genomes]
rs59829967	0.87[ASN][1000 genomes]
rs59901009	0.88[ASN][1000 genomes]
rs60257382	0.87[ASN][1000 genomes]
rs60319025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60578195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61149838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61520995	0.92[ASN][1000 genomes]
rs61877260	0.88[ASN][1000 genomes]
rs61878580	0.83[ASN][1000 genomes]
rs61878581	0.83[ASN][1000 genomes]
rs61878584	0.85[ASN][1000 genomes]
rs61878585	0.85[ASN][1000 genomes]
rs61878625	0.87[ASN][1000 genomes]
rs61878627	0.92[ASN][1000 genomes]
rs61878628	0.92[ASN][1000 genomes]
rs61878631	0.91[ASN][1000 genomes]
rs61878632	0.92[ASN][1000 genomes]
rs61878634	0.92[ASN][1000 genomes]
rs61878638	0.88[ASN][1000 genomes]
rs61889798	0.93[ASN][1000 genomes]
rs61889955	0.90[ASN][1000 genomes]
rs6483969	0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6484012	0.93[ASN][1000 genomes]
rs6484147	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6484148	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6484152	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7105321	0.86[ASN][1000 genomes]
rs7106234	0.81[JPT][hapmap]
rs7107021	0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7107290	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7107727	0.88[ASN][1000 genomes]
rs7107916	0.80[JPT][hapmap]
rs7108358	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7110652	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7111724	0.85[ASN][1000 genomes]
rs7115142	0.84[ASN][1000 genomes]
rs7118500	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7122422	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs7123728	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7124925	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7128234	0.81[JPT][hapmap]
rs7129047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7129531	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs713402	0.80[JPT][hapmap]
rs721008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs726102	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs72860548	0.91[ASN][1000 genomes]
rs73412899	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73415015	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479039	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7925889	0.80[JPT][hapmap]
rs7926678	0.82[ASN][1000 genomes]
rs7927874	0.85[ASN][1000 genomes]
rs7931957	0.82[ASN][1000 genomes]
rs7933018	0.93[ASN][1000 genomes]
rs7935242	0.83[ASN][1000 genomes]
rs7936409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7938534	0.85[ASN][1000 genomes]
rs7938543	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7938932	0.84[ASN][1000 genomes]
rs7939064	0.83[ASN][1000 genomes]
rs7946649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7947666	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7952229	0.92[ASN][1000 genomes]
rs9645625	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9888170	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:10182000-10186600	Enhancers	NHDF-Ad	bronchial
5	chr11:10182000-10187400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:10183000-10186800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:10183600-10186800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:10183800-10186800	Weak transcription	Right Ventricle	heart
9	chr11:10184600-10192000	Weak transcription	Fetal Intestine Small	intestine
10	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:10185200-10186800	Weak transcription	Fetal Lung	lung
12	chr11:10185800-10186800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:10186000-10186600	Enhancers	Hela-S3	cervix
14	chr11:10186200-10187000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10186200-10187200	Enhancers	Colon Smooth Muscle	Colon
16	chr11:10186200-10187200	Enhancers	Fetal Heart	heart
17	chr11:10186200-10191000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:10186400-10186800	Enhancers	A549	lung
20	chr11:10186400-10187000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:10186400-10187000	Enhancers	Aorta	Aorta
22	chr11:10186400-10187000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:10186400-10187200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Variant report

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