Variant report

Variant	rs13377305
Chromosome Location	chr11:10194965-10194966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10160247	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10160669	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10160692	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500718	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500719	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500720	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10743132	0.80[ASN][1000 genomes]
rs10840379	0.80[ASN][1000 genomes]
rs11042650	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042652	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042653	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042656	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042657	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042659	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042661	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042663	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11042664	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11042666	0.81[ASN][1000 genomes]
rs11042689	0.80[ASN][1000 genomes]
rs1135374	0.81[ASN][1000 genomes]
rs11607621	0.80[ASN][1000 genomes]
rs12273935	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12274104	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12275224	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12277662	0.86[AMR][1000 genomes]
rs12278680	0.82[ASN][1000 genomes]
rs12278735	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12280005	0.81[ASN][1000 genomes]
rs12281409	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12281526	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12282974	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12284884	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12286545	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12286927	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12287386	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12288200	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12288275	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12288486	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12288654	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12291196	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12291198	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12291253	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12293757	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12294455	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12418690	0.80[ASN][1000 genomes]
rs13377226	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13377297	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13377397	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13377398	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1442733	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1442734	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1442735	0.86[AMR][1000 genomes]
rs1442736	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16907496	0.81[ASN][1000 genomes]
rs16907498	0.81[ASN][1000 genomes]
rs16907500	0.81[ASN][1000 genomes]
rs16907503	0.81[ASN][1000 genomes]
rs16907509	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16907515	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16907519	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16907527	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907528	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907533	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907544	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907552	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907554	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907561	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907564	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907568	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907575	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16907615	0.80[ASN][1000 genomes]
rs16907635	0.82[ASN][1000 genomes]
rs1822294	0.82[ASN][1000 genomes]
rs1822295	0.82[ASN][1000 genomes]
rs1867136	0.81[ASN][1000 genomes]
rs1867137	0.81[ASN][1000 genomes]
rs1867138	0.81[ASN][1000 genomes]
rs2028575	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028576	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028577	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028578	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2069214	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2119991	0.81[ASN][1000 genomes]
rs2278628	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2278630	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2278632	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2278633	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2957671	0.80[ASN][1000 genomes]
rs2957674	0.80[ASN][1000 genomes]
rs2957699	0.80[ASN][1000 genomes]
rs3178898	0.81[ASN][1000 genomes]
rs34124136	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35598338	0.80[ASN][1000 genomes]
rs4543988	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4622247	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57521137	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57595438	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58340019	0.82[ASN][1000 genomes]
rs60319025	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60578195	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61149838	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61889798	0.80[ASN][1000 genomes]
rs73412899	0.81[ASN][1000 genomes]
rs73415015	0.81[ASN][1000 genomes]
rs7933018	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10194800-10206800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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