Variant report

Variant	rs16907515
Chromosome Location	chr11:10184607-10184608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10160247	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160669	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160692	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500718	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500719	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500720	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500721	0.90[ASN][1000 genomes]
rs10500722	0.81[ASN][1000 genomes]
rs10500723	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500724	0.80[ASN][1000 genomes]
rs10743132	0.93[ASN][1000 genomes]
rs10770106	0.83[EUR][1000 genomes]
rs10840379	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10840384	0.92[ASN][1000 genomes]
rs10840386	0.86[ASN][1000 genomes]
rs11042602	0.81[ASN][1000 genomes]
rs11042650	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042652	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042653	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042656	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042657	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042659	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042661	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042662	0.87[ASN][1000 genomes]
rs11042663	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042664	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042666	0.96[ASN][1000 genomes]
rs11042686	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11042689	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11042716	0.80[ASN][1000 genomes]
rs11042717	0.86[ASN][1000 genomes]
rs11042725	0.82[ASN][1000 genomes]
rs1135372	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1135374	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607621	0.93[ASN][1000 genomes]
rs11821308	0.88[ASN][1000 genomes]
rs12273935	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12274104	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275224	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277662	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278680	0.95[ASN][1000 genomes]
rs12278735	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12280005	0.96[ASN][1000 genomes]
rs12281409	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281526	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282974	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12284884	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286545	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286927	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287386	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288275	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288486	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288654	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291196	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291198	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291253	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12293757	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294455	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12418690	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12421666	0.88[ASN][1000 genomes]
rs13377226	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13377297	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13377305	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13377397	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377398	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442733	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1442734	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442735	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1442736	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907462	0.92[ASN][1000 genomes]
rs16907471	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907481	0.93[ASN][1000 genomes]
rs16907483	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16907493	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907496	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907498	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907500	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907503	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907504	0.94[ASN][1000 genomes]
rs16907509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907527	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907528	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907533	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907544	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907552	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907554	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907561	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907564	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907568	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907575	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907615	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16907635	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1812853	0.84[ASN][1000 genomes]
rs1822294	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822295	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867136	0.96[ASN][1000 genomes]
rs1867137	0.96[ASN][1000 genomes]
rs1867138	0.96[ASN][1000 genomes]
rs2028575	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028576	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028577	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028578	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069214	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2083717	0.80[ASN][1000 genomes]
rs2099877	0.89[ASN][1000 genomes]
rs2119991	0.96[ASN][1000 genomes]
rs2278628	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278630	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278632	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278634	0.89[ASN][1000 genomes]
rs2403290	0.89[ASN][1000 genomes]
rs2920147	0.84[ASN][1000 genomes]
rs2957671	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2957674	0.93[ASN][1000 genomes]
rs2957699	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3178898	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34124136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34984386	0.83[ASN][1000 genomes]
rs35598338	0.93[ASN][1000 genomes]
rs35815123	0.90[ASN][1000 genomes]
rs3814700	0.85[ASN][1000 genomes]
rs4267063	0.80[ASN][1000 genomes]
rs4399321	0.85[ASN][1000 genomes]
rs4459296	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4482025	0.83[ASN][1000 genomes]
rs4531462	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4543988	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4622247	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641466	0.85[ASN][1000 genomes]
rs55893317	0.90[ASN][1000 genomes]
rs56319831	0.88[ASN][1000 genomes]
rs56758314	0.90[ASN][1000 genomes]
rs57153895	0.85[ASN][1000 genomes]
rs57520536	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57521137	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57522724	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57595438	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57618276	0.92[ASN][1000 genomes]
rs57761181	0.88[ASN][1000 genomes]
rs58054521	0.88[ASN][1000 genomes]
rs58340019	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58652557	0.87[ASN][1000 genomes]
rs58842960	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59479500	0.81[AMR][1000 genomes]
rs59717668	0.88[ASN][1000 genomes]
rs59829967	0.87[ASN][1000 genomes]
rs59901009	0.88[ASN][1000 genomes]
rs60257382	0.87[ASN][1000 genomes]
rs60319025	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60578195	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61149838	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61520995	0.92[ASN][1000 genomes]
rs61877260	0.88[ASN][1000 genomes]
rs61878580	0.83[ASN][1000 genomes]
rs61878581	0.83[ASN][1000 genomes]
rs61878584	0.85[ASN][1000 genomes]
rs61878585	0.85[ASN][1000 genomes]
rs61878625	0.87[ASN][1000 genomes]
rs61878627	0.92[ASN][1000 genomes]
rs61878628	0.92[ASN][1000 genomes]
rs61878631	0.91[ASN][1000 genomes]
rs61878632	0.92[ASN][1000 genomes]
rs61878634	0.92[ASN][1000 genomes]
rs61878638	0.88[ASN][1000 genomes]
rs61889798	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61889955	0.90[ASN][1000 genomes]
rs6483969	0.85[ASN][1000 genomes]
rs6484012	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105321	0.86[ASN][1000 genomes]
rs7107021	0.80[ASN][1000 genomes]
rs7107727	0.88[ASN][1000 genomes]
rs7111724	0.85[ASN][1000 genomes]
rs7115142	0.84[ASN][1000 genomes]
rs7124925	0.93[ASN][1000 genomes]
rs7128838	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7129047	0.93[ASN][1000 genomes]
rs7129531	0.88[ASN][1000 genomes]
rs721008	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72860548	0.91[ASN][1000 genomes]
rs73412899	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73415015	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479039	0.81[ASN][1000 genomes]
rs7926678	0.82[ASN][1000 genomes]
rs7927874	0.85[ASN][1000 genomes]
rs7931957	0.82[ASN][1000 genomes]
rs7933018	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7935242	0.83[ASN][1000 genomes]
rs7936409	0.83[ASN][1000 genomes]
rs7938534	0.85[ASN][1000 genomes]
rs7938543	0.81[ASN][1000 genomes]
rs7938932	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7939064	0.83[ASN][1000 genomes]
rs7946649	0.85[ASN][1000 genomes]
rs7952229	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10170600-10189000	Weak transcription	Left Ventricle	heart
2	chr11:10178200-10185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10180200-10186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10182000-10186600	Enhancers	NHDF-Ad	bronchial
7	chr11:10182000-10187400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:10182200-10185800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10183000-10185000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:10183000-10186000	Weak transcription	Hela-S3	cervix
11	chr11:10183000-10186200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:10183000-10186800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:10183200-10185400	Weak transcription	NHEK	skin
14	chr11:10183200-10186400	Weak transcription	A549	lung
15	chr11:10183600-10185000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr11:10183600-10185400	Weak transcription	Ovary	ovary
17	chr11:10183600-10185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:10183600-10185800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10183600-10186800	Weak transcription	Adipose Nuclei	Adipose
20	chr11:10183800-10185400	Weak transcription	Osteobl	bone
21	chr11:10183800-10186800	Weak transcription	Right Ventricle	heart
22	chr11:10184000-10185200	Enhancers	Fetal Lung	lung
23	chr11:10184200-10185000	Enhancers	Colon Smooth Muscle	Colon
24	chr11:10184400-10186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:10184600-10186200	Weak transcription	Fetal Heart	heart
26	chr11:10184600-10192000	Weak transcription	Fetal Intestine Small	intestine
27	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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