Variant report

Variant	rs4459296
Chromosome Location	chr11:10309597-10309598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10308390..10310573-chr11:10310763..10312944,2	MCF-7	breast:
2	chr11:10309394..10311600-chr11:10314079..10317064,2	K562	blood:
3	chr11:10309577..10311734-chr11:10321406..10323896,2	K562	blood:
4	chr11:10308479..10310637-chr11:10311551..10314059,2	K562	blood:
5	chr11:10309394..10313803-chr11:10314307..10318397,4	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10160247	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10160669	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10160692	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10500718	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10500719	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10500720	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10500723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10743132	0.83[ASN][1000 genomes]
rs10770106	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840379	0.83[ASN][1000 genomes]
rs10840384	0.84[ASN][1000 genomes]
rs10840386	0.82[ASN][1000 genomes]
rs11042650	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042652	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042653	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042656	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042657	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042659	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042661	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042663	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042664	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042666	0.83[ASN][1000 genomes]
rs11042686	0.82[ASN][1000 genomes]
rs11042689	0.83[ASN][1000 genomes]
rs11042719	0.83[ASN][1000 genomes]
rs11042721	0.97[ASN][1000 genomes]
rs11607621	0.83[ASN][1000 genomes]
rs12274104	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12275224	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12277662	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12278680	0.85[ASN][1000 genomes]
rs12278735	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12280005	0.83[ASN][1000 genomes]
rs12281409	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12281526	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12282974	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12284884	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12286545	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12286927	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12287386	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12288200	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12288275	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12288486	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12288654	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12291196	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12291198	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12291253	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12293757	0.81[ASN][1000 genomes]
rs12418494	0.92[ASN][1000 genomes]
rs12418690	0.83[ASN][1000 genomes]
rs13377397	0.81[ASN][1000 genomes]
rs13377398	0.81[EUR][1000 genomes]
rs1442733	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1442734	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1442736	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907471	0.89[AFR][1000 genomes]
rs16907515	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907519	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907527	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907528	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907533	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907544	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907552	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907554	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16907561	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907564	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907568	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16907575	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16907615	0.83[ASN][1000 genomes]
rs16907635	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822294	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822295	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1867136	0.83[ASN][1000 genomes]
rs1867137	0.83[ASN][1000 genomes]
rs1867138	0.83[ASN][1000 genomes]
rs2028575	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2028576	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2028577	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2028578	0.81[ASN][1000 genomes]
rs2069214	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2119991	0.83[ASN][1000 genomes]
rs2278628	0.81[ASN][1000 genomes]
rs2278630	0.81[ASN][1000 genomes]
rs2278632	0.81[ASN][1000 genomes]
rs2278633	0.81[ASN][1000 genomes]
rs2957671	0.83[ASN][1000 genomes]
rs2957674	0.83[ASN][1000 genomes]
rs2957699	0.83[ASN][1000 genomes]
rs35598338	0.83[ASN][1000 genomes]
rs4531462	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4543988	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4622247	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57521137	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57522724	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57595438	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58340019	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59717668	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60319025	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60578195	0.81[ASN][1000 genomes]
rs61149838	0.81[ASN][1000 genomes]
rs61889798	0.83[ASN][1000 genomes]
rs6484160	0.83[ASN][1000 genomes]
rs6484161	0.97[ASN][1000 genomes]
rs7107727	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7933018	0.83[ASN][1000 genomes]
rs7945930	0.83[ASN][1000 genomes]
rs7950461	0.83[ASN][1000 genomes]
rs7952229	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
3	chr11:10291200-10313600	Weak transcription	NHEK	skin
4	chr11:10291200-10314400	Weak transcription	HSMM	muscle
5	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:10297000-10309600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
10	chr11:10299600-10310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:10304000-10312400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:10306400-10313800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:10306600-10314400	Weak transcription	Brain Germinal Matrix	brain
15	chr11:10306600-10314800	Weak transcription	Aorta	Aorta
16	chr11:10306800-10311000	Weak transcription	Ovary	ovary
17	chr11:10307000-10309600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:10307000-10313800	Weak transcription	Psoas Muscle	Psoas
19	chr11:10307000-10314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:10307200-10313400	Weak transcription	Fetal Kidney	kidney
21	chr11:10307200-10313400	Weak transcription	HUVEC	blood vessel
22	chr11:10307200-10313800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:10307200-10314400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:10307400-10310600	Weak transcription	Colonic Mucosa	Colon
25	chr11:10307400-10310600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:10307400-10311600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:10307400-10311800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:10307400-10313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:10307400-10313400	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:10307600-10309600	Weak transcription	Adipose Nuclei	Adipose
31	chr11:10307600-10310800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:10307600-10311400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:10307600-10311800	Weak transcription	Fetal Lung	lung
34	chr11:10307600-10313200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:10307600-10314400	Weak transcription	Primary B cells from cord blood	blood
36	chr11:10307600-10314400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:10307800-10309600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:10307800-10310400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:10307800-10313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:10307800-10314400	Weak transcription	Liver	Liver
41	chr11:10308000-10309600	Weak transcription	Fetal Brain Female	brain
42	chr11:10308200-10314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:10308400-10311200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:10308400-10313800	Weak transcription	Fetal Thymus	thymus
45	chr11:10308400-10314400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:10308600-10311200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:10308600-10312200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:10308600-10314400	Weak transcription	NH-A	brain
49	chr11:10308800-10310400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:10308800-10310600	Genic enhancers	Fetal Intestine Small	intestine

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