Variant report
Variant | rs56319831 |
---|---|
Chromosome Location | chr11:10179849-10179850 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10160247 | 0.88[ASN][1000 genomes] |
rs10160669 | 0.88[ASN][1000 genomes] |
rs10160692 | 0.88[ASN][1000 genomes] |
rs10500718 | 0.88[ASN][1000 genomes] |
rs10500719 | 0.88[ASN][1000 genomes] |
rs10500720 | 0.86[ASN][1000 genomes] |
rs10500721 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10500722 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10500724 | 0.85[ASN][1000 genomes] |
rs10743131 | 0.84[ASN][1000 genomes] |
rs10743132 | 0.81[ASN][1000 genomes] |
rs10743133 | 0.83[ASN][1000 genomes] |
rs10770105 | 0.83[ASN][1000 genomes] |
rs10840379 | 0.81[ASN][1000 genomes] |
rs10840381 | 0.84[ASN][1000 genomes] |
rs10840382 | 0.84[ASN][1000 genomes] |
rs10840384 | 0.81[ASN][1000 genomes] |
rs11042650 | 0.88[ASN][1000 genomes] |
rs11042652 | 0.87[ASN][1000 genomes] |
rs11042653 | 0.87[ASN][1000 genomes] |
rs11042656 | 0.85[ASN][1000 genomes] |
rs11042657 | 0.85[ASN][1000 genomes] |
rs11042659 | 0.85[ASN][1000 genomes] |
rs11042661 | 0.85[ASN][1000 genomes] |
rs11042662 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11042663 | 0.85[ASN][1000 genomes] |
rs11042664 | 0.85[ASN][1000 genomes] |
rs11042666 | 0.86[ASN][1000 genomes] |
rs11042687 | 0.83[ASN][1000 genomes] |
rs11042689 | 0.81[ASN][1000 genomes] |
rs11042702 | 0.84[ASN][1000 genomes] |
rs11042703 | 0.84[ASN][1000 genomes] |
rs11042714 | 0.84[ASN][1000 genomes] |
rs11042716 | 0.85[ASN][1000 genomes] |
rs1135372 | 0.89[ASN][1000 genomes] |
rs1135374 | 0.91[ASN][1000 genomes] |
rs11602090 | 0.83[ASN][1000 genomes] |
rs11607174 | 0.84[ASN][1000 genomes] |
rs11607621 | 0.81[ASN][1000 genomes] |
rs11821308 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12274104 | 0.87[ASN][1000 genomes] |
rs12275224 | 0.85[ASN][1000 genomes] |
rs12277662 | 0.82[ASN][1000 genomes] |
rs12278680 | 0.84[ASN][1000 genomes] |
rs12278735 | 0.87[ASN][1000 genomes] |
rs12279861 | 0.83[ASN][1000 genomes] |
rs12280005 | 0.86[ASN][1000 genomes] |
rs12281409 | 0.84[ASN][1000 genomes] |
rs12281526 | 0.85[ASN][1000 genomes] |
rs12282974 | 0.84[ASN][1000 genomes] |
rs12284884 | 0.85[ASN][1000 genomes] |
rs12286545 | 0.84[ASN][1000 genomes] |
rs12286927 | 0.87[ASN][1000 genomes] |
rs12287386 | 0.87[ASN][1000 genomes] |
rs12288200 | 0.84[ASN][1000 genomes] |
rs12288275 | 0.85[ASN][1000 genomes] |
rs12288486 | 0.87[ASN][1000 genomes] |
rs12288654 | 0.85[ASN][1000 genomes] |
rs12290748 | 0.82[ASN][1000 genomes] |
rs12291196 | 0.87[ASN][1000 genomes] |
rs12291198 | 0.87[ASN][1000 genomes] |
rs12291253 | 0.85[ASN][1000 genomes] |
rs12293757 | 0.88[ASN][1000 genomes] |
rs12418690 | 0.81[ASN][1000 genomes] |
rs12419593 | 0.84[ASN][1000 genomes] |
rs12421666 | 0.94[ASN][1000 genomes] |
rs13377226 | 0.81[ASN][1000 genomes] |
rs13377397 | 0.88[ASN][1000 genomes] |
rs13377398 | 0.84[ASN][1000 genomes] |
rs1442733 | 0.85[ASN][1000 genomes] |
rs1442734 | 0.84[ASN][1000 genomes] |
rs1442736 | 0.85[ASN][1000 genomes] |
rs16907462 | 0.85[ASN][1000 genomes] |
rs16907471 | 0.84[ASN][1000 genomes] |
rs16907481 | 0.87[ASN][1000 genomes] |
rs16907483 | 0.85[ASN][1000 genomes] |
rs16907493 | 0.86[ASN][1000 genomes] |
rs16907496 | 0.91[ASN][1000 genomes] |
rs16907498 | 0.91[ASN][1000 genomes] |
rs16907500 | 0.91[ASN][1000 genomes] |
rs16907503 | 0.91[ASN][1000 genomes] |
rs16907504 | 0.91[ASN][1000 genomes] |
rs16907509 | 0.90[ASN][1000 genomes] |
rs16907515 | 0.88[ASN][1000 genomes] |
rs16907519 | 0.88[ASN][1000 genomes] |
rs16907527 | 0.88[ASN][1000 genomes] |
rs16907528 | 0.88[ASN][1000 genomes] |
rs16907533 | 0.88[ASN][1000 genomes] |
rs16907544 | 0.87[ASN][1000 genomes] |
rs16907552 | 0.87[ASN][1000 genomes] |
rs16907554 | 0.87[ASN][1000 genomes] |
rs16907561 | 0.85[ASN][1000 genomes] |
rs16907564 | 0.85[ASN][1000 genomes] |
rs16907568 | 0.85[ASN][1000 genomes] |
rs16907575 | 0.84[ASN][1000 genomes] |
rs16907615 | 0.81[ASN][1000 genomes] |
rs16907635 | 0.84[ASN][1000 genomes] |
rs1812853 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1822294 | 0.84[ASN][1000 genomes] |
rs1822295 | 0.84[ASN][1000 genomes] |
rs1867136 | 0.86[ASN][1000 genomes] |
rs1867137 | 0.86[ASN][1000 genomes] |
rs1867138 | 0.86[ASN][1000 genomes] |
rs2028575 | 0.88[ASN][1000 genomes] |
rs2028576 | 0.88[ASN][1000 genomes] |
rs2028577 | 0.88[ASN][1000 genomes] |
rs2028578 | 0.88[ASN][1000 genomes] |
rs2044143 | 0.84[ASN][1000 genomes] |
rs2044144 | 0.84[ASN][1000 genomes] |
rs2069214 | 0.84[ASN][1000 genomes] |
rs2083715 | 0.81[ASN][1000 genomes] |
rs2083717 | 0.91[ASN][1000 genomes] |
rs2099877 | 0.83[ASN][1000 genomes] |
rs2119991 | 0.86[ASN][1000 genomes] |
rs2278628 | 0.88[ASN][1000 genomes] |
rs2278630 | 0.88[ASN][1000 genomes] |
rs2278632 | 0.88[ASN][1000 genomes] |
rs2278633 | 0.88[ASN][1000 genomes] |
rs2278634 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2403290 | 0.83[ASN][1000 genomes] |
rs2920147 | 0.88[ASN][1000 genomes] |
rs2957671 | 0.81[ASN][1000 genomes] |
rs2957674 | 0.81[ASN][1000 genomes] |
rs2957699 | 0.81[ASN][1000 genomes] |
rs3178898 | 0.91[ASN][1000 genomes] |
rs34051776 | 0.84[ASN][1000 genomes] |
rs34087225 | 0.81[ASN][1000 genomes] |
rs34124136 | 0.89[ASN][1000 genomes] |
rs34692066 | 0.84[ASN][1000 genomes] |
rs35598338 | 0.81[ASN][1000 genomes] |
rs35737881 | 0.84[ASN][1000 genomes] |
rs35815123 | 0.84[ASN][1000 genomes] |
rs36167833 | 0.83[ASN][1000 genomes] |
rs36170347 | 0.84[ASN][1000 genomes] |
rs4267063 | 0.91[ASN][1000 genomes] |
rs4323860 | 0.90[ASN][1000 genomes] |
rs4442543 | 0.83[ASN][1000 genomes] |
rs4482025 | 0.88[ASN][1000 genomes] |
rs4543988 | 0.88[ASN][1000 genomes] |
rs4597056 | 0.84[ASN][1000 genomes] |
rs4622247 | 0.88[ASN][1000 genomes] |
rs4910115 | 0.84[ASN][1000 genomes] |
rs55893317 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs55933041 | 0.83[ASN][1000 genomes] |
rs56063978 | 0.81[ASN][1000 genomes] |
rs56758314 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs57520536 | 0.86[ASN][1000 genomes] |
rs57521137 | 0.87[ASN][1000 genomes] |
rs57522724 | 0.81[ASN][1000 genomes] |
rs57595438 | 0.85[ASN][1000 genomes] |
rs57618276 | 0.85[ASN][1000 genomes] |
rs57761181 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58054521 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58340019 | 0.84[ASN][1000 genomes] |
rs58652557 | 0.81[ASN][1000 genomes] |
rs59829967 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59901009 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60257382 | 0.81[ASN][1000 genomes] |
rs60319025 | 0.85[ASN][1000 genomes] |
rs60578195 | 0.88[ASN][1000 genomes] |
rs61149838 | 0.88[ASN][1000 genomes] |
rs61520995 | 0.85[ASN][1000 genomes] |
rs61877260 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61878625 | 0.81[ASN][1000 genomes] |
rs61878627 | 0.85[ASN][1000 genomes] |
rs61878628 | 0.85[ASN][1000 genomes] |
rs61878631 | 0.84[ASN][1000 genomes] |
rs61878632 | 0.85[ASN][1000 genomes] |
rs61878634 | 0.85[ASN][1000 genomes] |
rs61878638 | 0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61889798 | 0.81[ASN][1000 genomes] |
rs61889955 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6484012 | 0.88[ASN][1000 genomes] |
rs6484147 | 0.84[ASN][1000 genomes] |
rs6484148 | 0.84[ASN][1000 genomes] |
rs6484152 | 0.84[ASN][1000 genomes] |
rs7107290 | 0.84[ASN][1000 genomes] |
rs7107399 | 0.85[ASN][1000 genomes] |
rs7107951 | 0.80[ASN][1000 genomes] |
rs7108358 | 0.84[ASN][1000 genomes] |
rs7110652 | 0.84[ASN][1000 genomes] |
rs7111724 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7116147 | 0.84[ASN][1000 genomes] |
rs7118500 | 0.84[ASN][1000 genomes] |
rs7123728 | 0.90[ASN][1000 genomes] |
rs7124925 | 0.87[ASN][1000 genomes] |
rs7129047 | 0.86[ASN][1000 genomes] |
rs7129531 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs716803 | 0.83[ASN][1000 genomes] |
rs721008 | 0.86[ASN][1000 genomes] |
rs726102 | 0.84[ASN][1000 genomes] |
rs72860548 | 0.84[ASN][1000 genomes] |
rs73412899 | 0.91[ASN][1000 genomes] |
rs73415015 | 0.91[ASN][1000 genomes] |
rs7479039 | 0.86[ASN][1000 genomes] |
rs7933018 | 0.81[ASN][1000 genomes] |
rs7938543 | 0.86[ASN][1000 genomes] |
rs7947666 | 0.84[ASN][1000 genomes] |
rs7952105 | 0.84[ASN][1000 genomes] |
rs7952229 | 0.81[ASN][1000 genomes] |
rs9735682 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
2 | nsv1039636 | chr11:10126747-10280570 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1036041 | chr11:10131018-10212202 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv975150 | chr11:10174580-10182242 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:10170600-10189000 | Weak transcription | Left Ventricle | heart |
2 | chr11:10176200-10184000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
3 | chr11:10177800-10183200 | Weak transcription | Ovary | ovary |
4 | chr11:10177800-10183800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
5 | chr11:10178000-10182200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
6 | chr11:10178000-10182200 | Weak transcription | HMEC | breast |
7 | chr11:10178000-10183600 | Weak transcription | Right Ventricle | heart |
8 | chr11:10178200-10180000 | Weak transcription | Hela-S3 | cervix |
9 | chr11:10178200-10180400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
10 | chr11:10178200-10180400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
11 | chr11:10178200-10182200 | Weak transcription | NHLF | lung |
12 | chr11:10178200-10182400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
13 | chr11:10178200-10185400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
14 | chr11:10178200-10213400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
15 | chr11:10179800-10181200 | Enhancers | Muscle Satellite Cultured Cells | -- |