Variant report

Variant	rs1450276
Chromosome Location	chr11:10347130-10347131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10324085..10326015-chr11:10346392..10348165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs12279871	0.81[CEU][hapmap]
rs1372810	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	0.91[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450266	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470686	0.91[EUR][1000 genomes]
rs1597450	0.84[EUR][1000 genomes]
rs16907654	1.00[ASW][hapmap];0.91[CEU][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17294609	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17294693	1.00[ASW][hapmap];0.91[CEU][hapmap];0.93[LWK][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs17295786	0.91[CEU][hapmap]
rs17296211	1.00[ASW][hapmap];0.91[CEU][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17358882	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17359382	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs17360118	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs2044781	0.86[EUR][1000 genomes]
rs28733206	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957657	0.91[CEU][hapmap];0.83[TSI][hapmap]
rs2957686	0.91[EUR][1000 genomes]
rs4077089	0.91[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403799	0.81[EUR][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878654	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs61889783	1.00[ASN][1000 genomes]
rs61889785	1.00[ASN][1000 genomes]
rs61889795	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	1.00[ASN][1000 genomes]
rs61889815	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889957	1.00[ASN][1000 genomes]
rs61891762	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891764	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891770	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891773	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891775	0.91[EUR][1000 genomes]
rs61891776	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891793	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	1.00[ASN][1000 genomes]
rs61892570	1.00[ASN][1000 genomes]
rs61892572	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	1.00[ASN][1000 genomes]
rs61892594	1.00[ASN][1000 genomes]
rs61892595	1.00[ASN][1000 genomes]
rs61892596	1.00[ASN][1000 genomes]
rs61892597	1.00[ASN][1000 genomes]
rs7103637	1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7107373	1.00[ASN][1000 genomes]
rs7108385	0.91[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109096	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	1.00[ASN][1000 genomes]
rs7111647	1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123541	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[GIH][hapmap];0.93[LWK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7929332	1.00[ASW][hapmap];0.91[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs7930218	1.00[ASW][hapmap];0.91[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs7933724	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7941320	0.86[EUR][1000 genomes]
rs7941557	0.92[EUR][1000 genomes]
rs7945990	1.00[ASN][1000 genomes]
rs7947210	1.00[ASN][1000 genomes]
rs7949974	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	1.00[ASW][hapmap];0.91[CEU][hapmap];0.86[LWK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10339600-10348800	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:10340200-10347400	Weak transcription	Pancreas	Pancrea
3	chr11:10340400-10350000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:10340800-10348400	Enhancers	Fetal Stomach	stomach
5	chr11:10341200-10348600	Enhancers	Rectal Smooth Muscle	rectum
6	chr11:10342800-10351600	Enhancers	Adipose Nuclei	Adipose
7	chr11:10343200-10351000	Enhancers	Stomach Mucosa	stomach
8	chr11:10343400-10347800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10343400-10353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:10343800-10350200	Enhancers	NHLF	lung
11	chr11:10344000-10347200	Enhancers	Fetal Intestine Small	intestine
12	chr11:10344000-10347600	Enhancers	Fetal Lung	lung
13	chr11:10344000-10349600	Enhancers	HUVEC	blood vessel
14	chr11:10344000-10351600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:10344000-10353200	Enhancers	NH-A	brain
16	chr11:10344000-10353400	Enhancers	Osteobl	bone
17	chr11:10344400-10348400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:10344400-10349000	Enhancers	Aorta	Aorta
19	chr11:10344400-10351600	Enhancers	Ovary	ovary
20	chr11:10344600-10347200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:10344600-10347200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:10344600-10347400	Enhancers	Liver	Liver
23	chr11:10344600-10347400	Weak transcription	Right Ventricle	heart
24	chr11:10344600-10347400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:10344600-10347800	Weak transcription	Brain Anterior Caudate	brain
26	chr11:10344600-10347800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:10344600-10348000	Weak transcription	Psoas Muscle	Psoas
28	chr11:10344600-10349800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:10344600-10350000	Weak transcription	HMEC	breast
30	chr11:10344600-10350200	Weak transcription	Brain Substantia Nigra	brain
31	chr11:10344600-10351000	Enhancers	Colon Smooth Muscle	Colon
32	chr11:10344600-10353200	Enhancers	Hela-S3	cervix
33	chr11:10344600-10353800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:10344800-10347400	Enhancers	HepG2	liver
35	chr11:10344800-10347800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:10344800-10347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:10344800-10348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:10344800-10348000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:10344800-10349800	Weak transcription	Fetal Heart	heart
40	chr11:10344800-10350000	Weak transcription	NHEK	skin
41	chr11:10345000-10347400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:10345000-10347600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:10345000-10347800	Weak transcription	Colonic Mucosa	Colon
44	chr11:10345000-10348000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:10345000-10348400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:10345200-10347400	Weak transcription	Left Ventricle	heart
47	chr11:10345200-10348000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:10345200-10350000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:10345600-10347800	Weak transcription	Placenta	Placenta
50	chr11:10345600-10349600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links