Variant report

Variant	rs61892575
Chromosome Location	chr11:10225574-10225575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1372810	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[ASN][1000 genomes]
rs1450266	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450276	1.00[ASN][1000 genomes]
rs16907654	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.95[EUR][1000 genomes]
rs17296211	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs2920149	0.91[EUR][1000 genomes]
rs2957657	0.94[EUR][1000 genomes]
rs4077089	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.89[EUR][1000 genomes]
rs61877264	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878635	0.84[EUR][1000 genomes]
rs61878652	0.88[EUR][1000 genomes]
rs61878654	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.91[EUR][1000 genomes]
rs61889957	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	1.00[ASN][1000 genomes]
rs61891767	1.00[ASN][1000 genomes]
rs61891768	1.00[ASN][1000 genomes]
rs61891770	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.87[AMR][1000 genomes]
rs61891773	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891776	1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.94[EUR][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7108385	1.00[ASN][1000 genomes]
rs7108546	0.82[EUR][1000 genomes]
rs7109096	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.85[EUR][1000 genomes]
rs7123541	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131546	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	1.00[ASN][1000 genomes]
rs72851674	1.00[ASN][1000 genomes]
rs72858820	1.00[ASN][1000 genomes]
rs72858863	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929332	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7945990	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
2	chr11:10208800-10229400	Weak transcription	NHLF	lung
3	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10221600-10227000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:10223400-10226400	Weak transcription	Left Ventricle	heart
8	chr11:10223800-10229600	Weak transcription	Osteobl	bone
9	chr11:10224400-10226000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr11:10224600-10226600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr11:10224800-10225600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:10224800-10226000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:10224800-10227200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:10225000-10226800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:10225000-10227000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:10225400-10227400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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