Variant report

Variant	rs72858902
Chromosome Location	chr11:10098189-10098190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs11608212	1.00[ASN][1000 genomes]
rs12098983	1.00[ASN][1000 genomes]
rs12274440	1.00[ASN][1000 genomes]
rs1372810	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271223	1.00[ASN][1000 genomes]
rs17271623	1.00[ASN][1000 genomes]
rs17272133	1.00[ASN][1000 genomes]
rs17292774	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.84[EUR][1000 genomes]
rs17296211	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17355751	1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	1.00[ASN][1000 genomes]
rs17358721	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2920149	0.82[EUR][1000 genomes]
rs2957657	0.83[EUR][1000 genomes]
rs4910071	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876942	1.00[ASN][1000 genomes]
rs61876945	1.00[ASN][1000 genomes]
rs61876949	1.00[ASN][1000 genomes]
rs61876951	1.00[ASN][1000 genomes]
rs61876972	1.00[ASN][1000 genomes]
rs61876973	1.00[ASN][1000 genomes]
rs61876974	1.00[ASN][1000 genomes]
rs61876975	1.00[ASN][1000 genomes]
rs61876976	1.00[ASN][1000 genomes]
rs61876977	1.00[ASN][1000 genomes]
rs61876978	1.00[ASN][1000 genomes]
rs61876980	1.00[ASN][1000 genomes]
rs61876982	1.00[ASN][1000 genomes]
rs61876983	1.00[ASN][1000 genomes]
rs61876984	1.00[ASN][1000 genomes]
rs61877004	1.00[ASN][1000 genomes]
rs61877005	1.00[ASN][1000 genomes]
rs61877038	0.83[AFR][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	1.00[ASN][1000 genomes]
rs61877044	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877264	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878627	0.90[EUR][1000 genomes]
rs61878635	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61878652	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61878654	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61889957	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	1.00[ASN][1000 genomes]
rs6484142	0.83[EUR][1000 genomes]
rs66536570	1.00[ASN][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7108546	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7110027	1.00[ASN][1000 genomes]
rs7111544	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	1.00[ASN][1000 genomes]
rs7118211	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7118427	1.00[ASN][1000 genomes]
rs7120043	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120403	1.00[ASN][1000 genomes]
rs7122370	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7123546	1.00[ASN][1000 genomes]
rs7125823	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854502	1.00[ASN][1000 genomes]
rs72855652	1.00[ASN][1000 genomes]
rs72855680	1.00[ASN][1000 genomes]
rs72857108	1.00[ASN][1000 genomes]
rs72858820	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342224	1.00[ASN][1000 genomes]
rs7928664	1.00[ASN][1000 genomes]
rs7929332	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935235	1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	1.00[ASN][1000 genomes]
rs7938570	1.00[ASN][1000 genomes]
rs7938773	1.00[ASN][1000 genomes]
rs7939096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7945309	1.00[ASN][1000 genomes]
rs7945990	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949110	1.00[ASN][1000 genomes]
rs7949493	1.00[ASN][1000 genomes]
rs7952455	1.00[ASN][1000 genomes]
rs9666488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:10085000-10098200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:10094000-10098200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:10094600-10098200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:10096800-10098600	Enhancers	Osteobl	bone
7	chr11:10096800-10100400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:10097200-10098400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:10097400-10098600	Enhancers	NHDF-Ad	bronchial
10	chr11:10097600-10098400	Enhancers	Colon Smooth Muscle	Colon
11	chr11:10097600-10098400	Enhancers	Ovary	ovary
12	chr11:10097600-10098400	Enhancers	Stomach Smooth Muscle	stomach
13	chr11:10097600-10098600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10097600-10098600	Enhancers	Brain Substantia Nigra	brain
15	chr11:10097600-10098600	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr11:10097600-10098600	Enhancers	Left Ventricle	heart
17	chr11:10097600-10098600	Enhancers	NHLF	lung
18	chr11:10097800-10098200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:10097800-10098200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:10097800-10098200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:10097800-10098400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:10097800-10098400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:10097800-10098400	Enhancers	Aorta	Aorta
24	chr11:10097800-10098400	Enhancers	Brain Anterior Caudate	brain
25	chr11:10097800-10098400	Enhancers	Fetal Heart	heart
26	chr11:10097800-10098400	Enhancers	Spleen	Spleen
27	chr11:10097800-10098600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:10097800-10098600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:10097800-10098600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:10097800-10098600	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr11:10097800-10098600	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:10097800-10098600	Enhancers	Fetal Muscle Leg	muscle
33	chr11:10097800-10098600	Enhancers	Lung	lung
34	chr11:10097800-10098600	Enhancers	Psoas Muscle	Psoas
35	chr11:10097800-10098600	Enhancers	Rectal Smooth Muscle	rectum
36	chr11:10097800-10098600	Enhancers	Right Atrium	heart
37	chr11:10097800-10098800	Enhancers	Right Ventricle	heart
38	chr11:10098000-10098200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:10098000-10098200	Enhancers	Fetal Stomach	stomach
40	chr11:10098000-10098400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr11:10098000-10098400	Enhancers	Esophagus	oesophagus
42	chr11:10098000-10098600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr11:10098000-10098600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:10098000-10098600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:10098000-10098600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr11:10098000-10098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:10098000-10098600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:10098000-10098600	Enhancers	Placenta	Placenta

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