Variant report

Variant	rs61877038
Chromosome Location	chr11:10029083-10029084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs17271623	0.81[EUR][1000 genomes]
rs17272133	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61876949	0.81[AMR][1000 genomes]
rs61876951	0.81[AMR][1000 genomes]
rs61876972	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs61876973	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876974	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876975	0.88[AMR][1000 genomes]
rs61876976	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876977	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876978	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876980	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876982	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61876983	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61876984	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61877004	0.85[EUR][1000 genomes]
rs61877005	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61877039	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61877042	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61877046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61889956	0.84[AMR][1000 genomes]
rs61889957	0.84[AMR][1000 genomes]
rs61892569	0.84[AMR][1000 genomes]
rs61892570	0.84[AMR][1000 genomes]
rs6483859	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66536570	0.85[EUR][1000 genomes]
rs66553354	0.90[EUR][1000 genomes]
rs7108187	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7109648	0.85[EUR][1000 genomes]
rs7110027	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7111544	0.84[AMR][1000 genomes]
rs7111647	0.84[AMR][1000 genomes]
rs7117364	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7118211	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7118427	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7120403	0.83[EUR][1000 genomes]
rs7123546	0.83[EUR][1000 genomes]
rs72855652	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72855680	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72857108	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72858820	0.93[AFR][1000 genomes]
rs72858902	0.83[AFR][1000 genomes]
rs72861738	0.84[AMR][1000 genomes]
rs7342224	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7935235	0.85[AMR][1000 genomes]
rs7938570	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7938773	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7939096	0.83[AFR][1000 genomes]
rs7949110	0.85[AMR][1000 genomes]
rs7949493	0.81[AMR][1000 genomes]
rs7952455	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:10010600-10051200	Weak transcription	Ovary	ovary
10	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
11	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:10021800-10030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:10024200-10047800	Weak transcription	Osteobl	bone
17	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
18	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
19	chr11:10026200-10030000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr11:10026600-10030000	Weak transcription	HSMMtube	muscle
21	chr11:10026600-10030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10026800-10030200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:10027200-10029200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:10027200-10029400	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr11:10027200-10030400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:10027400-10030000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:10027400-10030000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr11:10027600-10029400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:10027600-10030800	ZNF genes & repeats	Fetal Stomach	stomach
30	chr11:10027800-10030600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr11:10028000-10029200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:10028800-10029200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:10028800-10030600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:10029000-10030600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:10029000-10030600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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