Variant report

Variant	rs61877039
Chromosome Location	chr11:10029895-10029896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11608212	1.00[ASN][1000 genomes]
rs12098983	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12274440	1.00[ASN][1000 genomes]
rs17271223	1.00[ASN][1000 genomes]
rs17271623	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17272133	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	1.00[ASN][1000 genomes]
rs17294693	1.00[ASN][1000 genomes]
rs17355751	1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	1.00[ASN][1000 genomes]
rs17358721	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[ASN][1000 genomes]
rs17360118	1.00[ASN][1000 genomes]
rs4910071	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs56067762	1.00[ASN][1000 genomes]
rs61876910	1.00[ASN][1000 genomes]
rs61876915	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876942	1.00[ASN][1000 genomes]
rs61876945	1.00[ASN][1000 genomes]
rs61876949	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876951	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876972	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876973	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876974	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876975	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61876976	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876977	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876978	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876980	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876982	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876983	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876984	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877004	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877005	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877038	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61877042	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877046	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878652	0.80[AMR][1000 genomes]
rs61878654	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.80[AMR][1000 genomes]
rs61889957	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	1.00[ASN][1000 genomes]
rs61892573	1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	1.00[ASN][1000 genomes]
rs61892594	1.00[ASN][1000 genomes]
rs61892595	1.00[ASN][1000 genomes]
rs61892596	1.00[ASN][1000 genomes]
rs61892597	1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66536570	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66553354	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109648	0.86[EUR][1000 genomes]
rs7110027	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118427	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7120403	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123467	0.80[AMR][1000 genomes]
rs7123546	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129274	1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	1.00[ASN][1000 genomes]
rs72854502	1.00[ASN][1000 genomes]
rs72855652	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855680	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857108	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858820	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	1.00[ASN][1000 genomes]
rs72858902	1.00[ASN][1000 genomes]
rs72861738	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	1.00[ASN][1000 genomes]
rs7342224	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928664	1.00[ASN][1000 genomes]
rs7929332	1.00[ASN][1000 genomes]
rs7930218	1.00[ASN][1000 genomes]
rs7935235	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	1.00[ASN][1000 genomes]
rs7938570	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938773	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7942807	1.00[ASN][1000 genomes]
rs7945309	1.00[ASN][1000 genomes]
rs7949110	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7949493	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7952455	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
6	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:10010600-10051200	Weak transcription	Ovary	ovary
10	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
11	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:10021800-10030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:10024200-10047800	Weak transcription	Osteobl	bone
17	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel
18	chr11:10024800-10054000	Weak transcription	Hela-S3	cervix
19	chr11:10026200-10030000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr11:10026600-10030000	Weak transcription	HSMMtube	muscle
21	chr11:10026600-10030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10026800-10030200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:10027200-10030400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:10027400-10030000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:10027400-10030000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr11:10027600-10030800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr11:10027800-10030600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr11:10028800-10030600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:10029000-10030600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:10029000-10030600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:10029200-10030600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:10029200-10030600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10029400-10030200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:10029400-10030400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
35	chr11:10029800-10030400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:10029800-10030400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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