Variant report

Variant	rs72861762
Chromosome Location	chr11:10222117-10222118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10219263..10222663-chr11:10324916..10328525,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000254554	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1372810	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450265	1.00[ASN][1000 genomes]
rs1450266	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450268	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450275	1.00[ASN][1000 genomes]
rs1450276	1.00[ASN][1000 genomes]
rs16907654	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.94[EUR][1000 genomes]
rs17296211	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17296765	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733206	1.00[ASN][1000 genomes]
rs2920149	0.91[EUR][1000 genomes]
rs2957657	0.93[EUR][1000 genomes]
rs4077089	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877263	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61877264	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878635	0.84[EUR][1000 genomes]
rs61878652	0.88[EUR][1000 genomes]
rs61878654	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889817	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889836	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889840	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889842	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889843	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889845	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889846	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889847	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.90[EUR][1000 genomes]
rs61889957	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891762	1.00[ASN][1000 genomes]
rs61891764	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891767	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891768	1.00[ASN][1000 genomes]
rs61891770	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891771	0.81[AMR][1000 genomes]
rs61891773	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891774	0.84[AMR][1000 genomes]
rs61891776	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61891793	1.00[ASN][1000 genomes]
rs61892569	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484142	0.93[EUR][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7108385	1.00[ASN][1000 genomes]
rs7108546	0.81[EUR][1000 genomes]
rs7109096	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.85[EUR][1000 genomes]
rs7123541	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7125823	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129220	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7131546	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850458	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851670	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72851674	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858820	1.00[ASN][1000 genomes]
rs72858863	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929332	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935257	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7945990	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949974	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896043	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9705133	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
4	chr11:10208800-10229400	Weak transcription	NHLF	lung
5	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
6	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
8	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:10214200-10225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:10214800-10224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:10215600-10224400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10219200-10222600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:10219800-10222800	Weak transcription	Osteobl	bone
16	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:10221000-10222800	Weak transcription	NHDF-Ad	bronchial
18	chr11:10221400-10223200	Weak transcription	Psoas Muscle	Psoas
19	chr11:10221600-10223600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:10221600-10227000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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