Variant report

Variant	rs61877054
Chromosome Location	chr11:10078799-10078800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10072187..10074484-chr11:10077289..10078994,2	MCF-7	breast:

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs11608212	1.00[ASN][1000 genomes]
rs12098983	1.00[ASN][1000 genomes]
rs12274440	1.00[ASN][1000 genomes]
rs1372810	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271223	1.00[ASN][1000 genomes]
rs17271623	1.00[ASN][1000 genomes]
rs17272133	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294609	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294693	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295786	0.86[EUR][1000 genomes]
rs17355751	1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	1.00[ASN][1000 genomes]
rs17358721	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360118	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910071	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs61876915	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876942	1.00[ASN][1000 genomes]
rs61876945	1.00[ASN][1000 genomes]
rs61876949	1.00[ASN][1000 genomes]
rs61876951	1.00[ASN][1000 genomes]
rs61876972	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61876973	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61876974	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61876975	1.00[ASN][1000 genomes]
rs61876976	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61876977	1.00[ASN][1000 genomes]
rs61876978	1.00[ASN][1000 genomes]
rs61876980	1.00[ASN][1000 genomes]
rs61876982	1.00[ASN][1000 genomes]
rs61876983	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61876984	1.00[ASN][1000 genomes]
rs61877004	1.00[ASN][1000 genomes]
rs61877005	1.00[ASN][1000 genomes]
rs61877039	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877042	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877046	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877263	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877264	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878627	0.86[EUR][1000 genomes]
rs61878635	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61878652	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61878654	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889783	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889785	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889795	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889796	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889802	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889815	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889816	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61889957	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892572	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892573	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892575	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892593	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892594	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892595	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892596	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61892597	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	1.00[ASN][1000 genomes]
rs66536570	1.00[ASN][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105355	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107373	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7108546	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7110027	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	1.00[ASN][1000 genomes]
rs7118427	1.00[ASN][1000 genomes]
rs7120043	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120403	1.00[ASN][1000 genomes]
rs7122370	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123467	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7123546	1.00[ASN][1000 genomes]
rs7125823	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129274	1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72854502	1.00[ASN][1000 genomes]
rs72855652	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72855680	1.00[ASN][1000 genomes]
rs72857108	1.00[ASN][1000 genomes]
rs72858820	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858902	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861738	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861762	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861767	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72861799	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342224	1.00[ASN][1000 genomes]
rs7928664	1.00[ASN][1000 genomes]
rs7929332	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930218	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933724	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935235	1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	1.00[ASN][1000 genomes]
rs7938570	1.00[ASN][1000 genomes]
rs7938773	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7939531	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7942807	1.00[ASN][1000 genomes]
rs7945309	1.00[ASN][1000 genomes]
rs7945990	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947210	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949110	1.00[ASN][1000 genomes]
rs7949493	1.00[ASN][1000 genomes]
rs7952455	1.00[ASN][1000 genomes]
rs9666488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10089200	Weak transcription	Ovary	ovary
3	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10074200-10079200	Weak transcription	Osteobl	bone
5	chr11:10074400-10079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:10075400-10079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:10078400-10079000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10078600-10080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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