Variant report

Variant	rs61878586
Chromosome Location	chr11:10104830-10104831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs11608212	1.00[ASN][1000 genomes]
rs12098983	1.00[ASN][1000 genomes]
rs12274440	1.00[ASN][1000 genomes]
rs1372810	1.00[ASN][1000 genomes]
rs17271223	1.00[ASN][1000 genomes]
rs17271623	1.00[ASN][1000 genomes]
rs17272133	1.00[ASN][1000 genomes]
rs17292774	1.00[ASN][1000 genomes]
rs17294609	1.00[ASN][1000 genomes]
rs17294693	1.00[ASN][1000 genomes]
rs17296211	1.00[ASN][1000 genomes]
rs17355751	1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	1.00[ASN][1000 genomes]
rs17358721	1.00[ASN][1000 genomes]
rs17358882	1.00[ASN][1000 genomes]
rs17359382	1.00[ASN][1000 genomes]
rs17360118	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876939	0.93[AMR][1000 genomes]
rs61876942	1.00[ASN][1000 genomes]
rs61876945	1.00[ASN][1000 genomes]
rs61876949	1.00[ASN][1000 genomes]
rs61876951	1.00[ASN][1000 genomes]
rs61876972	1.00[ASN][1000 genomes]
rs61876973	1.00[ASN][1000 genomes]
rs61876974	1.00[ASN][1000 genomes]
rs61876975	1.00[ASN][1000 genomes]
rs61876976	1.00[ASN][1000 genomes]
rs61876977	1.00[ASN][1000 genomes]
rs61876978	1.00[ASN][1000 genomes]
rs61876980	1.00[ASN][1000 genomes]
rs61876982	1.00[ASN][1000 genomes]
rs61876983	1.00[ASN][1000 genomes]
rs61876984	1.00[ASN][1000 genomes]
rs61877004	1.00[ASN][1000 genomes]
rs61877005	1.00[ASN][1000 genomes]
rs61877039	1.00[ASN][1000 genomes]
rs61877042	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	1.00[ASN][1000 genomes]
rs61877046	1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	1.00[ASN][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878654	1.00[ASN][1000 genomes]
rs61878655	1.00[ASN][1000 genomes]
rs61878657	1.00[ASN][1000 genomes]
rs61878658	1.00[ASN][1000 genomes]
rs61878659	1.00[ASN][1000 genomes]
rs61880160	1.00[ASN][1000 genomes]
rs61889783	1.00[ASN][1000 genomes]
rs61889785	1.00[ASN][1000 genomes]
rs61889795	1.00[ASN][1000 genomes]
rs61889796	1.00[ASN][1000 genomes]
rs61889802	1.00[ASN][1000 genomes]
rs61889815	1.00[ASN][1000 genomes]
rs61889816	1.00[ASN][1000 genomes]
rs61889817	1.00[ASN][1000 genomes]
rs61889836	1.00[ASN][1000 genomes]
rs61889840	1.00[ASN][1000 genomes]
rs61889957	1.00[ASN][1000 genomes]
rs61892569	1.00[ASN][1000 genomes]
rs61892570	1.00[ASN][1000 genomes]
rs61892572	1.00[ASN][1000 genomes]
rs61892573	1.00[ASN][1000 genomes]
rs61892575	1.00[ASN][1000 genomes]
rs61892593	1.00[ASN][1000 genomes]
rs61892594	1.00[ASN][1000 genomes]
rs61892595	1.00[ASN][1000 genomes]
rs61892596	1.00[ASN][1000 genomes]
rs61892597	1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	1.00[ASN][1000 genomes]
rs66536570	1.00[ASN][1000 genomes]
rs66553354	1.00[ASN][1000 genomes]
rs7103637	1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	1.00[ASN][1000 genomes]
rs7107373	1.00[ASN][1000 genomes]
rs7108187	1.00[ASN][1000 genomes]
rs7110027	1.00[ASN][1000 genomes]
rs7111544	1.00[ASN][1000 genomes]
rs7111647	1.00[ASN][1000 genomes]
rs7117364	1.00[ASN][1000 genomes]
rs7118211	1.00[ASN][1000 genomes]
rs7118427	1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7120403	1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123546	1.00[ASN][1000 genomes]
rs7125823	1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	1.00[ASN][1000 genomes]
rs72850458	1.00[ASN][1000 genomes]
rs72854502	1.00[ASN][1000 genomes]
rs72855652	1.00[ASN][1000 genomes]
rs72855680	1.00[ASN][1000 genomes]
rs72857108	1.00[ASN][1000 genomes]
rs72858820	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	1.00[ASN][1000 genomes]
rs72858902	1.00[ASN][1000 genomes]
rs72861738	1.00[ASN][1000 genomes]
rs72861762	1.00[ASN][1000 genomes]
rs72861767	1.00[ASN][1000 genomes]
rs72861799	1.00[ASN][1000 genomes]
rs7342224	1.00[ASN][1000 genomes]
rs7928664	1.00[ASN][1000 genomes]
rs7929332	1.00[ASN][1000 genomes]
rs7930218	1.00[ASN][1000 genomes]
rs7933724	1.00[ASN][1000 genomes]
rs7935235	1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	1.00[ASN][1000 genomes]
rs7938570	1.00[ASN][1000 genomes]
rs7938773	1.00[ASN][1000 genomes]
rs7939096	1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7945309	1.00[ASN][1000 genomes]
rs7945990	1.00[ASN][1000 genomes]
rs7947210	1.00[ASN][1000 genomes]
rs7949110	1.00[ASN][1000 genomes]
rs7949493	1.00[ASN][1000 genomes]
rs7952455	1.00[ASN][1000 genomes]
rs9666488	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10105400	Weak transcription	Left Ventricle	heart
2	chr11:10098600-10108400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10101600-10105400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10101800-10108400	Weak transcription	Ovary	ovary
6	chr11:10102800-10106200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:10103000-10105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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