Variant report

Variant	rs17272133
Chromosome Location	chr11:10003861-10003862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10002720..10004321-chr11:10011527..10014066,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs11608212	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs12098983	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274440	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17271223	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17271623	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17292774	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17355751	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17356069	1.00[ASN][1000 genomes]
rs17356237	1.00[ASN][1000 genomes]
rs17356369	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17358721	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17358882	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17359382	1.00[ASN][1000 genomes]
rs4910071	1.00[ASN][1000 genomes]
rs55811615	1.00[ASN][1000 genomes]
rs56067762	1.00[ASN][1000 genomes]
rs61876910	1.00[ASN][1000 genomes]
rs61876915	1.00[ASN][1000 genomes]
rs61876922	1.00[ASN][1000 genomes]
rs61876923	1.00[ASN][1000 genomes]
rs61876926	1.00[ASN][1000 genomes]
rs61876927	1.00[ASN][1000 genomes]
rs61876942	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876945	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876948	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61876949	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876951	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876972	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876973	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876977	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876978	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876980	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877004	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877038	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61877039	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877042	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877044	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61877046	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877050	1.00[ASN][1000 genomes]
rs61877054	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61877264	1.00[ASN][1000 genomes]
rs61878586	1.00[ASN][1000 genomes]
rs61878652	0.80[AMR][1000 genomes]
rs61878654	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878655	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878657	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878658	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61878659	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61880160	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61889956	0.80[AMR][1000 genomes]
rs61889957	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892569	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61892570	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6483792	1.00[ASN][1000 genomes]
rs6483859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66536570	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66553354	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104591	1.00[ASN][1000 genomes]
rs7105355	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7108187	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109648	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7110027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111544	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7111647	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7117364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118427	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120043	1.00[ASN][1000 genomes]
rs7120403	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122370	1.00[ASN][1000 genomes]
rs7123467	0.80[AMR][1000 genomes]
rs7123546	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129274	1.00[ASN][1000 genomes]
rs7130478	1.00[ASN][1000 genomes]
rs7131546	1.00[ASN][1000 genomes]
rs72854502	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855652	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72857108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72858820	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72858863	1.00[ASN][1000 genomes]
rs72858902	1.00[ASN][1000 genomes]
rs72861738	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7342224	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928664	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7935235	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935610	1.00[ASN][1000 genomes]
rs7936602	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938570	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939096	1.00[ASN][1000 genomes]
rs7939269	1.00[ASN][1000 genomes]
rs7939531	1.00[ASN][1000 genomes]
rs7942807	1.00[ASN][1000 genomes]
rs7945309	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949110	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949493	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952455	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666488	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
5	chr11:9981400-10004200	Weak transcription	Esophagus	oesophagus
6	chr11:9981400-10004200	Weak transcription	Lung	lung
7	chr11:9981400-10004400	Weak transcription	HepG2	liver
8	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
9	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:9981400-10014800	Weak transcription	Dnd41	blood
11	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
13	chr11:9981800-10004800	Weak transcription	Ovary	ovary
14	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
15	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
17	chr11:9985800-10004000	Weak transcription	Placenta	Placenta
18	chr11:9985800-10004200	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
22	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
23	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:9989400-10004000	Weak transcription	Fetal Stomach	stomach
25	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:9990000-10012600	Weak transcription	Liver	Liver
27	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
30	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:9995400-10004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:9996000-10004200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr11:9999000-10004000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:9999400-10004200	Weak transcription	Fetal Intestine Large	intestine
38	chr11:9999600-10004200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:9999600-10010200	Weak transcription	Adipose Nuclei	Adipose
40	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:9999800-10004200	Weak transcription	Fetal Heart	heart
42	chr11:9999800-10009800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:10000400-10004000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:10000800-10004600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
48	chr11:10002200-10005000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:10002400-10004800	Enhancers	HSMM	muscle
50	chr11:10002400-10006200	Strong transcription	Monocytes-CD14+_RO01746	blood

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